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BaseInfo

ncRNA ID bra-miR5725
Species Brassica rapa
Class miRNA
Genome position chrA8:5349176-5349380 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 141 - AUUUGGCACAAUCUGAUCUGC - 161
Stem-loop(if miRNA) --------------       CU   UUACGU                                                       A            C   -    AAU
              AAGGUAU  UCU      UAACAAAUAGUAUACGAUGCAGAUCAGAUUGUGCCAAAUCUAAAAAUUACUUAAG ACACACAUAUGU AAU UCAU   C
              |||||||  |||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||
              UUCUAUA  AGG      AUUGUUUAUCAUAUGCUACGUCUAGUCUAACACGGUUUAGAUUUUUAAUGAAUUC UGUGUGUAUACA UUA GGUA   A
AAGGAUUAAAAGGA       UU   ------                                                       G            A   U    CCG
Stem-loop sequence AAGGUAUCUUCUUUACGUUAACAAAUAGUAUACGAUGCAGAUCAGAUUGUGCCAAAUCUAAAAAUUACUUAAGAACACACAUAUGUCAAUUCAUAAUCAGCCAUGGUAUUAACAUAUGUGUGUGCUUAAGUAAUUUUUAGAUUUGGCACAAUCUGAUCUGCAUCGUAUACUAUUUGUUAGGAUUAUAUCUUAGGAAAAUUAGGAA

Reference

1 PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa";
Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y;
J Exp Bot. 63:1025-1038(2012).