ncRNA ID | bra-miR5725 |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA8:5349176-5349380 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 141 - AUUUGGCACAAUCUGAUCUGC - 161 |
Stem-loop(if miRNA) |
--------------       CU   UUACGU                                                       A            C   -    AAU               AAGGUAU  UCU      UAACAAAUAGUAUACGAUGCAGAUCAGAUUGUGCCAAAUCUAAAAAUUACUUAAG ACACACAUAUGU AAU UCAU   C               |||||||  |||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||               UUCUAUA  AGG      AUUGUUUAUCAUAUGCUACGUCUAGUCUAACACGGUUUAGAUUUUUAAUGAAUUC UGUGUGUAUACA UUA GGUA   A AAGGAUUAAAAGGA       UU   ------                                                       G            A   U    CCG |
Stem-loop sequence | AAGGUAUCUUCUUUACGUUAACAAAUAGUAUACGAUGCAGAUCAGAUUGUGCCAAAUCUAAAAAUUACUUAAGAACACACAUAUGUCAAUUCAUAAUCAGCCAUGGUAUUAACAUAUGUGUGUGCUUAAGUAAUUUUUAGAUUUGGCACAAUCUGAUCUGCAUCGUAUACUAUUUGUUAGGAUUAUAUCUUAGGAAAAUUAGGAA |
1 | PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa"; Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y; J Exp Bot. 63:1025-1038(2012). |