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BaseInfo

ncRNA ID novel_gma_miR1323
Species Glycine max
Class miRNA
Genome position Chr9:5336494-5336557 [+]
Reference genome Glycine_max_v2.0
Source SRR1451642;SRR2968974;SRR2968978;SRR835758;SRR835759;SRR835761;SRR835762;SRR835763;SRR835765;SRR835766;SRR835767;SRR835770;SRR835771;SRR835773;SRR1451605;SRR1451611;SRR1451613;SRR1451617;SRR1451619;SRR1451620;SRR1451622
Length 21
Mature sequence(if miRNA) 44 - AGCAAGACAUCCUUUCUCACU - 64
Stem-loop(if miRNA) --    CU       A     C    -   AAG
  UGAG  AAGGAUG CUUGC GGUA UAU   U
  ||||  ||||||| ||||| |||| |||
  ACUC  UUCCUAC GAACG CCGU AUG   A
UC    -U       A     A    U   GGU
Stem-loop sequence UGAGCUAAGGAUGACUUGCCGGUAUAUAAGUAUGGGUAUUGCCAGCAAGACAUCCUUUCUCACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003525499.3
ncRNA:21   UCACUCUUUCCUACAGAACGA   1
  **|||*||||*||||||||||
targets:91   UUUGACAAAGCAUGUCUUGCU   111

2.5 PREDICTED: Glycine max protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC100799405), mRNA protein ASPARTIC PROTEASE IN GUARD CELL 2-like(LOC100799405) coding protein psRNATarget
XM_014769599.1
ncRNA:21   UCACUCUUUCCUACAGAACGA   1
  **|||*||||||||||*||||
targets:424   UAUGAUAAAGGAUGUCGUGCU   444

2.5 PREDICTED: Glycine max uncharacterized LOC106796686 (LOC106796686), partial mRNA uncharacterized LOC106796686(LOC106796686) coding protein psRNATarget
XM_006589488.2
ncRNA:21   UCACU-CUUUCCUACAGAACGA   1
  =*|||-|||||||||||||||*
targets:410   GUUGAAGAAAGGAUGUCUUGCA   431

3.0 PREDICTED: Glycine max F-box/LRR-repeat protein At3g48880-like (LOC100791249), transcript variant X4, mRNA F-box/LRR-repeat protein At3g48880-like(LOC100791249) coding protein psRNATarget
XM_006589487.2
ncRNA:21   UCACU-CUUUCCUACAGAACGA   1
  =*|||-|||||||||||||||*
targets:509   GUUGAAGAAAGGAUGUCUUGCA   530

3.0 PREDICTED: Glycine max F-box/LRR-repeat protein At3g48880-like (LOC100791249), transcript variant X2, mRNA F-box/LRR-repeat protein At3g48880-like(LOC100791249) coding protein psRNATarget
XM_006589486.2
ncRNA:21   UCACU-CUUUCCUACAGAACGA   1
  =*|||-|||||||||||||||*
targets:1363   GUUGAAGAAAGGAUGUCUUGCA   1384

3.0 PREDICTED: Glycine max F-box/LRR-repeat protein At3g48880-like (LOC100791249), transcript variant X1, mRNA F-box/LRR-repeat protein At3g48880-like(LOC100791249) coding protein psRNATarget