Search result

BaseInfo

ncRNA ID	novel_gma_miR1317
Species	Glycine max
Class	miRNA
Genome position	Chr6:12012288-12012401 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451642
Length	20
Mature sequence(if miRNA)	1 - UUGGGAAGGAGGGGAGUGGG - 20
Stem-loop(if miRNA)	CGUUA         AACAAUAA     C   UAUUUAAACUGGAAAAAAAAAUAAUCUA      GCUUCCUUC        UGGAA AUU                            G      |||||||||        ||||| |||                            A      UGAGGGGAG        GGGUU UUA                            G --GGG         -----GAA     U   UUUUUUGAUAACCCAUCUUUAGAUUUUG
Stem-loop sequence	CGUUAGCUUCCUUCAACAAUAAUGGAACAUUUAUUUAAACUGGAAAAAAAAAUAAUCUAGAGGUUUUAGAUUUCUACCCAAUAGUUUUUUAUUUUUGGGAAGGAGGGGAGUGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003531799.3	ncRNA:20   GGGUGAGGGGAGGAAGGGUU   1   ||||||||||||=||||||* targets:210   CCCACUCCCCUCUUUCCCAC   229 Target Full Sequence	2.5	PREDICTED: Glycine max zinc finger RNA-binding protein-like (LOC100814580), mRNA	zinc finger RNA-binding protein-like(LOC100814580)	coding protein	psRNATarget
XM_006606186.2	ncRNA:20   GGGUGAGGGGAGGAAGGGUU   1   =|*|||||=||||||||||| targets:105   UCAACUCCUCUCCUUCCCAA   124 Target Full Sequence	2.5	PREDICTED: Glycine max dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B-like (LOC100817179), transcript variant X2, mRNA	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B-like(LOC100817179)	coding protein	psRNATarget
XM_006606187.2	ncRNA:20   GGGUGAGGGGAGGAAGGGUU   1   =|*|||||=||||||||||| targets:105   UCAACUCCUCUCCUUCCCAA   124 Target Full Sequence	2.5	PREDICTED: Glycine max dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B-like (LOC100817179), transcript variant X3, mRNA	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B-like(LOC100817179)	coding protein	psRNATarget
XM_003556187.3	ncRNA:20   GGGUGAGGGGAGGAAGGGUU   1   =|*|||||=||||||||||| targets:105   UCAACUCCUCUCCUUCCCAA   124 Target Full Sequence	2.5	PREDICTED: Glycine max dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B-like (LOC100817179), transcript variant X1, mRNA	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B-like(LOC100817179)	coding protein	psRNATarget
XM_006580116.2	ncRNA:20   GGGUGAGGGGAGGAAGGGUU   1   *||||*|||||||||=|||| targets:30   ACCACCCCCCUCCUUUCCAA   49 Target Full Sequence	2.5	PREDICTED: Glycine max heat stress transcription factor A-4c-like (LOC100798004), mRNA	heat stress transcription factor A-4c-like(LOC100798004)	coding protein	psRNATarget
XM_006601469.2	ncRNA:20   GG-GUGAGGGGAGGAAGGGUU   1   ||-||=||||||||||||||| targets:1533   CCACAUUCCCCUCCUUCCCAA   1553 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC102660623 (LOC102660623), mRNA	uncharacterized LOC102660623(LOC102660623)	coding protein	psRNATarget
XM_014768918.1	ncRNA:20   GGGUGAGGGGAGGAAGGGUU   1   =||==||||||||||||||* targets:30   UCCGUUCCCCUCCUUCCCAC   49 Target Full Sequence	3.0	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g68930 (LOC100781103), transcript variant X2, mRNA	putative pentatricopeptide repeat-containing protein At1g68930(LOC100781103)	coding protein	psRNATarget
XM_003518227.3	ncRNA:20   GGGUGAGGGGAGGAAGGGUU   1   =||==||||||||||||||* targets:30   UCCGUUCCCCUCCUUCCCAC   49 Target Full Sequence	3.0	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g68930 (LOC100781103), transcript variant X1, mRNA	putative pentatricopeptide repeat-containing protein At1g68930(LOC100781103)	coding protein	psRNATarget
XM_003544208.3	ncRNA:20   GGGUGAGGGGAGGAAGGGUU   1   =||==||||||||||||||* targets:25   UCCGUUCCCCUCCUUCCCAC   44 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like (LOC100791867), mRNA	pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like(LOC100791867)	coding protein	psRNATarget