ncRNA ID |
osa_circ_040267 |
Species |
Oryza sativa |
Class |
circRNA |
Genome position |
9:22754186-22755409[+] |
Reference genome |
RGAPv7 |
Source |
PlantcircBase
|
Method |
SMALT and Segemehl/find_circ/NA |
Type |
exonic |
Splice junction sequence |
TGGGTGGCAAAGTTCTATATAAGTTTGCAGATGAAAAGGAGAAGGAGATGCATCGAGCCAAAGAAACGGATGCGATGGTCAAGATGTTGTCACAATACAATAATTTCTGATGTATTCTCGAATATGTTTCACTTTAGGCAGATGAAATCATGTATGATGATGGGGTTATTCAAATGGATGGTGCTGATGAATTGGCAACG |
Tissues |
leaf/root/shoot, root |
Exon boundary |
Yes-Yes |
Splicing signals |
AG-GT |
circRNA sequence |
NA |
Genomic sequence |
TGGGTGGCAAAGTTCTATATAAGTTTGCAGATGAAAAGGAGAAGGAGATGCATCGAGCCAAAGAAACGGATGCGATGGTCAAGATGTTGTCACAATACAAAAACCTTTGTGGATCAAGAAAGGTGATACTAATTATCCTTCGGTTCTTAGTTTGAATCATGTGAGTCCGATTAAGCAGTGCTTATTTAAGCATCCCACTCATCTGACAAGTATAAATCAGATATTAATTCTATGAGATTTTCAGGGTTTCTTATTTGTAAGCATATAGCAAATTCATAAACTACTATGGAGTACATAAGAATGTTTTCTGCAGTCCTTCCTAAAAAAGCGTGGAAATGAGTTCTAGTTGTAAATACTAGAATTTTGCCTTAGGTCTACTATTTGAACCCCAAATATGCAATGAATGAGCTTCCTACCATATGGTGAATAATTGACTTCAACGATATTGACAGTTGAACCAATAAAATATAAGTGTGGTGGGATAGTTACTATTTGGCCAAAAAAAAGAAAAGAAAAAGAAATCATGTTATCTAAGCAGGCTGTCCGTACAGGTTAGGGCACATTACCTTTCACACGATGATGTTCTTGCTGGTGTTGTGAATCTGATAAAGAAGCTCAAAATTAAGAGAATTATCATTGGTTCAAGGTAAGATCCCAAATTCTACATTTTGAATTTCCATTCCTTCTTTCAAAAGAGATCCATTTCTCTATTGGCATATATTACTCCATGCGCATGCTAAACCAGGGTATTATGCAGGAGCATGTCAAAGGAAGCGATGCTGCGCAAATGCTGTCAGGTTTGGGTGGTTATCAATGGAAAACACATGTGTACTAGGTATAGTTTGAGATATTCTCCAAAATCTATAATCAACACCTGCAGCAATATTGGATCAAATCTAGCAACAAGTTCATGGATGAGATCATTCTAAAATGCAGCAATGATCATCTGGAACATACCGGGAGCATTGGATATGGAGGGAGCGCTGAATCTTTGGCATCTGTACATGAGCTGAGCGATGATTCAAATGGCTACACAACACCACCAAGTGATTTTGTAAGCGGCTTCCTAGCAAAGCACTAAACAAATGCATGCAGTCTATGATCTTGGTTCAGATTTCGAATACTAATTTCTGATGTATTCTCGAATATGTTTCACTTTAGGCAGATGAAATCATGTATGATGATGGGGTTATTCAAATGGATGGTGCTGATGAATTGGCAACG |