Search result

BaseInfo

ncRNA ID bra-miR158-3p
Species Brassica rapa
Class miRNA
Genome position chrA8:3271798-3271904 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 66 - UUUCCAAAUGUAGACAAAGCA - 86
Stem-loop(if miRNA) AUA  -       AUCU   CUU         U            -AUU    A
   GC ACGUUAU    GUU   CUUUGUCUA CGUUUGGAAAAG    GAUG C
   || |||||||    |||   ||||||||| ||||||||||||    ||||
   UG UGCAGUA    CAA   GAAACAGAU GUAAACCUUUUC    CUAU G
AGA  C       GUGC   AAC         -            ACAU    C
Stem-loop sequence AUAGCACGUUAUAUCUGUUCUUCUUUGUCUAUCGUUUGGAAAAGAUUGAUGACGCUAUCUACACUUUUCCAAAUGUAGACAAAGCAAAACCGUGAUGACGUCGUAGA

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).