Search result

BaseInfo

ncRNA ID novel_gma_miR1307
Species Glycine max
Class miRNA
Genome position Chr5:11320020-11320198 [+]
Reference genome Glycine_max_v2.0
Source SRR1451642
Length 24
Mature sequence(if miRNA) 1 - AAGGAGAAUCUGAAUGAAAGUUUU - 24
Stem-loop(if miRNA) --         C   AU    -      --AAAAAAAA   A    A    AA         -    -------------AA     ACAUCGCUCGAGA
  AAGGAGAAU UGA  GAAA GUUUUU          AAG GAAA AAGA  AGAAAAAGG UUUC               GUCUC             U
  ||||||||| |||  |||| ||||||          ||| |||| ||||  ||||||||| ||||               |||||
  UUUCUUUUA ACU  CUUU CAAAGA          UUC CUUU UUCU  UCUUUUUUC AGAG               UUUGU             A
UC         A   -C    A      GUUAACUCUG   -    C    --         G    AUAUAUAUCCCUCAU     GAUAAGCUCACAA
Stem-loop sequence AAGGAGAAUCUGAAUGAAAGUUUUUAAAAAAAAAAGAGAAAAAAGAAAAGAAAAAGGUUUCAAGUCUCACAUCGCUCGAGAUAAACACUCGAAUAGUGUUUUACUCCCUAUAUAUAGAGAGCUUUUUUCUUCUUCUUUCCUUGUCUCAAUUGAGAAACAUUUCCUCAAAUUUUCUUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014765828.1
ncRNA:20   GAAAGUAAGUCUAAGAGGAA   1
  |*|||||||||=||||||||
targets:1   CAUUCAUUCAGGUUCUCCUU   20

2.5 PREDICTED: Glycine max uncharacterized LOC100776750 (LOC100776750), transcript variant X6, mRNA uncharacterized LOC100776750(LOC100776750) coding protein psRNATarget
XM_014765834.1
ncRNA:20   GAAAGUAAGUCUAAGAGGAA   1
  |*|||||||||=||||||||
targets:1   CAUUCAUUCAGGUUCUCCUU   20

2.5 PREDICTED: Glycine max uncharacterized LOC100776750 (LOC100776750), transcript variant X12, mRNA uncharacterized LOC100776750(LOC100776750) coding protein psRNATarget