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BaseInfo

ncRNA ID novel_gma_miR1299
Species Glycine max
Class miRNA
Genome position Chr2:40929313-40929435 [+]
Reference genome Glycine_max_v2.0
Source SRR1451642
Length 19
Mature sequence(if miRNA) 105 - UACAUGAAUGCAUCCUAAC - 123
Stem-loop(if miRNA) --      A        CAU   UA     AUC    G          C   A   G   UUU
  UAGGGU CAUUCAUG   CUU  UAUGU   CUUU GAUCCGAACA AUU UGU UCC   C
  |||||| ||||||||   |||  |||||   |||| |||||||||| ||| ||| |||
  AUCCUA GUAAGUAC   GAA  AUACA   GAAA CUAGGUUUGU UAA ACA AGG   G
CA      C        AUC   -C     -CA    A          U   A   -   CUA
Stem-loop sequence UAGGGUACAUUCAUGCAUCUUUAUAUGUAUCCUUUGGAUCCGAACACAUUAUGUGUCCUUUCGAUCGGAACAAAAUUUGUUUGGAUCAAAAGACACAUACAAGCUACAUGAAUGCAUCCUAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003546214.3
ncRNA:19   CAAUCCUACGUAAGUACAU   1
  |||||*||||||*||||||
targets:1386   GUUAGCAUGCAUGCAUGUA   1404

2.5 PREDICTED: Glycine max ADP-ribosylation factor GTPase-activating protein AGD12-like (LOC100810806), mRNA ADP-ribosylation factor GTPase-activating protein AGD12-like(LOC100810806) coding protein psRNATarget
XM_014778416.1
ncRNA:19   CAAUCCUACGUAAGUACAU   1
  *|||*|||||||||||||*
targets:681   AUUAAGAUGCAUUCAUGUU   699

3.0 PREDICTED: Glycine max putative cysteine-rich receptor-like protein kinase 32 (LOC100802852), mRNA putative cysteine-rich receptor-like protein kinase 32(LOC100802852) coding protein psRNATarget