ncRNA ID | novel_gma_miR1299 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr2:40929313-40929435 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451642 |
Length | 19 |
Mature sequence(if miRNA) | 105 - UACAUGAAUGCAUCCUAAC - 123 |
Stem-loop(if miRNA) |
--      A        CAU   UA     AUC    G          C   A   G   UUU   UAGGGU CAUUCAUG   CUU  UAUGU   CUUU GAUCCGAACA AUU UGU UCC   C   |||||| ||||||||   |||  |||||   |||| |||||||||| ||| ||| |||   AUCCUA GUAAGUAC   GAA  AUACA   GAAA CUAGGUUUGU UAA ACA AGG   G CA      C        AUC   -C     -CA    A          U   A   -   CUA |
Stem-loop sequence | UAGGGUACAUUCAUGCAUCUUUAUAUGUAUCCUUUGGAUCCGAACACAUUAUGUGUCCUUUCGAUCGGAACAAAAUUUGUUUGGAUCAAAAGACACAUACAAGCUACAUGAAUGCAUCCUAAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003546214.3 |
|
2.5 | PREDICTED: Glycine max ADP-ribosylation factor GTPase-activating protein AGD12-like (LOC100810806), mRNA | ADP-ribosylation factor GTPase-activating protein AGD12-like(LOC100810806) | coding protein | psRNATarget | |||||||||
XM_014778416.1 |
|
3.0 | PREDICTED: Glycine max putative cysteine-rich receptor-like protein kinase 32 (LOC100802852), mRNA | putative cysteine-rich receptor-like protein kinase 32(LOC100802852) | coding protein | psRNATarget |