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BaseInfo

ncRNA ID novel_gma_miR1296
Species Glycine max
Class miRNA
Genome position Chr20:3064215-3064357 [+]
Reference genome Glycine_max_v2.0
Source SRR1451642;SRR1294485;SRR2045228;SRR3160568;SRR1295521;SRR1451617;SRR1294476;SRR1294477;SRR1451623;SRR1451624;SRR1451627
Length 24
Mature sequence(if miRNA) 120 - AAUAUGAUCCGACGAAAUACAAGU - 143
Stem-loop(if miRNA) --UC    G     C                        CAC   -                         A
    GUAU UCGUU GGUCAUAUUCGAGACUUUUGCAAG   GAG UAUGAUUUUUUGUGUAUGCAGUAAA G
    |||| ||||| ||||||||||||||||||||||||   ||| ||||||||||||||||||||||||| A
    CAUA AGCAG CUAGUAUAAGCUUUGGAAACGUUC   CUC AUGCUAAGAAACACAUACGUCAUUU G
UGAA    A     C                        -AU   C                         U
Stem-loop sequence UCGUAUGUCGUUCGGUCAUAUUCGAGACUUUUGCAAGCACGAGUAUGAUUUUUUGUGUAUGCAGUAAAAGAGUUUUACUGCAUACACAAAGAAUCGUACCUCUACUUGCAAAGGUUUCGAAUAUGAUCCGACGAAAUACAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014772405.1
ncRNA:24   UGAACAUAAAGCAGCCUAGUAUAA   1
  |||||*||*|||||||||||||||
targets:172   ACUUGCAUGUCGUCGGAUCAUAUU   195

2.0 PREDICTED: Glycine max IST1-like protein (LOC106797583), mRNA IST1-like protein(LOC106797583) coding protein psRNATarget