ncRNA ID | novel_gma_miR1296 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr20:3064215-3064357 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451642;SRR1294485;SRR2045228;SRR3160568;SRR1295521;SRR1451617;SRR1294476;SRR1294477;SRR1451623;SRR1451624;SRR1451627 |
Length | 24 |
Mature sequence(if miRNA) | 120 - AAUAUGAUCCGACGAAAUACAAGU - 143 |
Stem-loop(if miRNA) |
--UC    G     C                        CAC   -                         A     GUAU UCGUU GGUCAUAUUCGAGACUUUUGCAAG   GAG UAUGAUUUUUUGUGUAUGCAGUAAA G     |||| ||||| ||||||||||||||||||||||||   ||| ||||||||||||||||||||||||| A     CAUA AGCAG CUAGUAUAAGCUUUGGAAACGUUC   CUC AUGCUAAGAAACACAUACGUCAUUU G UGAA    A     C                        -AU   C                         U |
Stem-loop sequence | UCGUAUGUCGUUCGGUCAUAUUCGAGACUUUUGCAAGCACGAGUAUGAUUUUUUGUGUAUGCAGUAAAAGAGUUUUACUGCAUACACAAAGAAUCGUACCUCUACUUGCAAAGGUUUCGAAUAUGAUCCGACGAAAUACAAGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_014772405.1 |
|
2.0 | PREDICTED: Glycine max IST1-like protein (LOC106797583), mRNA | IST1-like protein(LOC106797583) | coding protein | psRNATarget |