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BaseInfo

ncRNA ID bra-miR9555a-3p
Species Brassica rapa
Class miRNA
Genome position chrA7:22508145-22508351 [-]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 67 - UUUCCCGUAAAGCUUAGAACC - 87
Stem-loop(if miRNA) UAA            C        A   G    U                     -------A    A                    C   C        C   A
   GUUCUUAAAAUA AUGUAUGU UAU UAUA AUUAUAUAUGCGUAUGUAAUU        UGGG UUCUAAGCUUUACGGGAAAC CAA CGAAAGUU CUU A
   |||||||||||| |||||||| ||| |||| |||||||||||||||||||||        |||| |||||||||||||||||||| ||| |||||||| |||
   CAAGAAUUUUAU UACAUACA AUA AUAU UAAUAUAUACGCAUACAUUAA        GCCC AAGAUUCGAAAUGCCCUUUG GUU GCUUUUAA GAA A
AUC            A        C   A    U                     CCAUUAAC    C                    C   A        A   U
Stem-loop sequence UAAGUUCUUAAAAUACAUGUAUGUAUAUGUAUAUAUUAUAUAUGCGUAUGUAAUUAUGGGAUUCUAAGCUUUACGGGAAACCCAACCGAAAGUUCCUUAAAUAAGAAAUUUUCGAUUGCGUUUCCCGUAAAGCUUAGAACCCCGCAAUUACCAAUUACAUACGCAUAUAUAAUUUAUAAAUACACAUACAUAUAUUUUAAGAACCUA

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).