ncRNA ID | bra-miR9555a-5p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA7:22508145-22508351 [-] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 126 - UUCUAAGCUUUACGGGAAACC - 146 |
Stem-loop(if miRNA) |
UAA            C        A   G    U                     -------A    A                    C   C        C   A    GUUCUUAAAAUA AUGUAUGU UAU UAUA AUUAUAUAUGCGUAUGUAAUU        UGGG UUCUAAGCUUUACGGGAAAC CAA CGAAAGUU CUU A    |||||||||||| |||||||| ||| |||| |||||||||||||||||||||        |||| |||||||||||||||||||| ||| |||||||| |||    CAAGAAUUUUAU UACAUACA AUA AUAU UAAUAUAUACGCAUACAUUAA        GCCC AAGAUUCGAAAUGCCCUUUG GUU GCUUUUAA GAA A AUC            A        C   A    U                     CCAUUAAC    C                    C   A        A   U |
Stem-loop sequence | UAAGUUCUUAAAAUACAUGUAUGUAUAUGUAUAUAUUAUAUAUGCGUAUGUAAUUAUGGGAUUCUAAGCUUUACGGGAAACCCAACCGAAAGUUCCUUAAAUAAGAAAUUUUCGAUUGCGUUUCCCGUAAAGCUUAGAACCCCGCAAUUACCAAUUACAUACGCAUAUAUAAUUUAUAAAUACACAUACAUAUAUUUUAAGAACCUA |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |