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BaseInfo

ncRNA ID novel_gma_miR1280
Species Glycine max
Class miRNA
Genome position Chr1:52417748-52417831 [-]
Reference genome Glycine_max_v2.0
Source SRR1451642;SRR2045237
Length 24
Mature sequence(if miRNA) 61 - AAGCCCGAUUUGAACGUUGACCGU - 84
Stem-loop(if miRNA) --     CG    GA        -   -    CUCAGAUGGUUG
  AAGCC  AUUU  ACGUUGAC CGU UAAC            A
  |||||  ||||  |||||||| ||| ||||
  UUUGG  UGAG  UGCAACUG GCA UGUA            U
CC     --    UC        U   C    ACUGUACACCGU
Stem-loop sequence AAGCCCGAUUUGAACGUUGACCGUUAACCUCAGAUGGUUGAUUGCCACAUGUCAAUGUCACGUGUCAACGUCUGAGUGGUUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006583894.2
ncRNA:24   UGCCAGUUGCAAGUUUAGCCCGAA   1
  ||*|||||||||=|||||||||||
targets:2569   ACAGUCAACGUUUAAAUCGGGCUU   2592

1.5 PREDICTED: Glycine max probable WRKY transcription factor 3 (LOC100802109), mRNA probable WRKY transcription factor 3(LOC100802109) coding protein psRNATarget