Search result

BaseInfo

ncRNA ID novel_gma_miR1271
Species Glycine max
Class miRNA
Genome position Chr14:4546516-4546666 [+]
Reference genome Glycine_max_v2.0
Source SRR1451642
Length 24
Mature sequence(if miRNA) 128 - AAGAGACAAUAGAAUAACCAGACC - 151
Stem-loop(if miRNA) --A      UC    C          C  AC       G  C    - A  -U    A   UAAUA     UU   U
   UUGGUU  UUUG UGUCUUUUUU CA  UGUUCUU UG UGUU C UG  AGUU UGU     UUUAA  UUG G
   ||||||  |||| |||||||||| ||  ||||||| || |||| | ||  |||| |||     |||||  ||| A
   GACCAA  AGAU ACAGAGAAAA GU  ACAGGGA AU ACAA G AC  UUAA ACG     AAAUU  AAC U
CCA      UA    A          A  CA       G  A    A A  UU    C   --UCA     UU   U
Stem-loop sequence AUUGGUUUCUUUGCUGUCUUUUUUCCAACUGUUCUUGUGCUGUUCAUGUAGUUAUGUUAAUAUUUAAUUUUGUGAUUCAAUUUUAAAACUGCACAAUUUUCAAGAAACAAUAGAGGGACAACUGAAAAAGAGACAAUAGAAUAACCAGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014766816.1
ncRNA:24   CCAGACCAAUAAGAUAACAGAGAA   1
  **|=|||||*||||=|||||||||
targets:1085   ACUUUGGUUCUUCUGUUGUCUCUU   1108

2.5 PREDICTED: Glycine max uncharacterized mitochondrial protein AtMg00810-like (LOC106795887), mRNA uncharacterized mitochondrial protein AtMg00810-like(LOC106795887) coding protein psRNATarget
XM_014772485.1
ncRNA:24   CCAGACCAAUAAGAUAACAGAGAA   1
  **|=|||||*||||*|||||||||
targets:917   ACUUUGGUUCUUCUUUUGUCUCUU   940

2.5 PREDICTED: Glycine max uncharacterized mitochondrial protein AtMg00810-like (LOC106797658), mRNA uncharacterized mitochondrial protein AtMg00810-like(LOC106797658) coding protein psRNATarget