ncRNA ID |
osa_circ_039514 |
Species |
Oryza sativa |
Class |
circRNA |
Genome position |
9:17828664-17832968[NA] |
Reference genome |
RGAPv7 |
Source |
PlantcircBase
|
Method |
SMALT and Segemehl/find_circ |
Type |
intergenic |
Splice junction sequence |
CTTCTTGCGAGGATTCTGTTTCCCTTGTGAAGCACCAATTACTGCCAAAATACCAAAGATTCCCCATCTTGTGGCCACACAGCTTGCCCGTTACTTTCCTCGAGGAAAGTGGAAGAGCTGATATGAGGTACCTTGATCTGGTGAATCCTTCCTAAATCTGCAGGAGAAGCCACAGCATTACTTTTTAGTTCATGTATATC |
Tissues |
leaf and panicle/root |
Exon boundary |
No-No |
Splicing signals |
AC-CT |
circRNA sequence |
NA |
Genomic sequence |
CTTCTTGCGAGGATTCTGTTTCCCTTGTGAAGCACCAATTACTGCCAAAATACCAAAGATTCCCCATCTTGTGGCCACACAGCTTGCCCGTTACTTTCCTGAACGTTCATTCTGCTCCTCCATCCTGTGATCAACCAAGTGAAGTTCATGCAAATAGCCAAAAAGCCCTCTCTAAAAATAGTTCTTCGGTTTATTCTGCTGTGTATACCGAAATTCTAAATATTACGAGAAGTTCAGATACCATGTAAAGGAATAGAAGCCCAACAAAAGAAAATGCTCAATCAGGCCTTTAGTTGGGCACTTGAAAGTGATGGGTTTAAAAAGTTTCAGTGTACCATAATCAGTTCGTTACAATAAACAAGATAGAAGCCTTTAAAGGAAAGCACAAACATGAACATCAAATCAGCAAAGCAAAGCAAAACGATACCAAGAAAACGATAAGAAAGAAATGAAAATAGGACGCAAGCTGTGTCCTCTCATTGACCCAAGAAAAGATTCTACAACAGGGTCCTTTACCTGATTGACCTTTTACCGTTTCTATCTAAGCATGATTGATCAAATAGTGAAAGAGCTGCACAGCCATTTCACCTATGTGATGCTTGCACCCTGATTGATTCGACCGACAGGACAAAACACATGTGCCACTTGCTCTCATGCTGCATGTCGTTTTCGCTCTTCAAATGTTCTGCTCCATCGAAGCATCATCTGGTAAAATAAAGAAGTGGAGCCACCTGAGAGAAAAGAAAAGGATAAACAGCAACGTCAGTGTGGAGTTAACTTCATGCACCAACCAATCACCCCAAAGTTCACCAACCAACCGTTCGCCCAAAAGGTCAAGTTGCTAGGGAAAGATGTGCAACTCTACTAGTATCACACAAGTAAAATGAAGAAAAAAAGATGGGCAACTCGATGTGTGCGTATAAATGTATCTGTGCACGCATGTGAGTGGCCATGAAAATGACAGATCCGTAAAACAAGGAAGCAAACCAAAGAACACAAGATATACTGGTAGGATCATCGAGTTGGACCATGACAGATAAACTTATGCACCTTATGCCTAGACGTATGCATAATGCATATTTGCATAGATGGAAGGATCGCATCTCATACATTGATTCAATAGAATGCAACTACTTTTTGCAGTATAGGGACACCAAAAAGGATAAAAAAAACATGGCTCAAAATCTGCAAAACAGGCTGTAGACCGAAACAAGATAGTTGTTACTTAAGTAGAATAACCATAGCTTATTATAATAGTCTCTGTGACAACCAATCTCCACAGCAGACATAGCATAGATCACAAATCTTTATAAAGACCTACTCCTGAGGGTCTATAGGTTAGAGGCGACTTATCTTCCTATTCCAGGACTCCATAAGAATAATGACAGAAAAACCTTTATGCTCCAAGTTGAACACTTGAACCTTGAAACAAGCAAAAGCACGGTGTCAGGAAATTTATAATCCTCTGTGAATTGAATAATAGACTATAAAGTAATATACTTCAGACAGAATTTCCTAACTGACTCCATTCAGATGAACCTGATTCATAATAAAGTGGTCCCATCAAACTAACCACGCATGAGATGAAAATGTTAGTGCTTCATCTTAATAAGAAAAACCTTCGGACAGACACCTACATGCATGCTAATCACAACTACAGGGAAATGCAAAAATGTAATTATTTAGTAGTACAAAATTATCAGGCTAAGACTTCTAAGCAGACAACTACATTGAATTCTAAACAAGATTGATACTAACCGTAGTTGTTGAAGATATGTAAGTAGAACCATACCGCTTGACTAAAAGTTATATGTAACAATAACCAAGAAATTGTAGAGTCTTCCCACACCTATTAGCATGTCATACACAACAAATAAAAACTCTAAGGTTTTAACTGTACAATTAATTTTTGTGAATAAATTTATTCTGAAATGAATTGTTTGATGGAAGCAGTGCCCAAATAGCACACAAAGATACACCTTAAGAACAGGTTTAGTTGGCTAGAGAGAGAGAGAGAGAGAAACATCTGTGTATTAAATGGAACGGAAAGCATAAATATTTTAGGGGGAAAAGGAGTGCTGTTCAAGTTTCAAACAGTGGAAGTCTGTCATACATATTGAAATATATCAGAATAGAAAAGCGAGAAAGCTAATATAACAATGCATGTCGAAACAAATGAATCATGCCAACCTAAATGGGTGCATATGTTACACTATAAAAGTACACTTTTCCTGCTCATCAACCAAAGTAGTCAGTGGACAACTGGAAAACAGCAGCGCAACCCCATCATGTAGCACAGAAACAAAAAAAAAAAAGACAGCTTAACAGATGCATAATTTTTGTTTGCTTGCATTTTTAATAAATAACCCCATTTGAACAAAGGGTTGGGAACAGGAAGAGATGAAACAATGATTGACAAAGAAGACGTAAAGGTTGCAACAAAGTCAAGCATAACTGCATCAGTGGATTTTTCAGTGGTTGCAAAGGTAGCTAAAAGAAGAACCAGCAGCAGCAACTTTGATGAAGCACGAGCGAAAAAAAAAATTTGGTTGGTGTGATATTTTATCAAATAAGACAATTTTATCTATGCATTAGCTCCCAAACAAAAAATGGTCTACTATGCAGTCTGCACATCTATCAATGAAGAAATTTGGAGGTACATGAGAGCTGAATTATAGCTGTAAAATGTTTGTTGCATAAGCTTCAACATATTAACAATCCAAGTTCCTTCCAGACATGTCCATTCCTTAATCTGAGATCTCACCCAAGCATGTTAAAGGGGCAGTAGGTAGACCATCAAGTAAACTAACACAGGAAATTCAAAACACAAGTACAATCAATATAAAGATATTTTTGTTCATCTATCAGAATAGCGAAGTAAGTGGTAAAAAACAATTAGTCTTTTAGATGTTTGATAGAAAGAATTTAACATGGTTGCTCAAGTCACATTTATATGTGCTGCAGTGCTTAAAAGTGAACTAAAGGTATGATTGTAGAAGGTAGTTATATATTCTTAAATTCATTATAATCCAGAAATATATGGATTCTTAACAGAATTCCTTGACAGTTGGGCATATTGATATTTACCAGAATTTGGAAGGTGGAATAGAGCTTTAAGAGAAGACACATCAGAATGTTGATATAGTGATCCCATATCTTTTCAAAATAAAAAAGAGACATTCATTGCATAAAAAAATAACAGGGGAAAAATATTTGTTCAACTTCTTTAAGCATGAATTGACAAACTTGATCCTCACTGAACAGGAGAGGAATGCCGAGACAAAGAACAGAGATATTGCACAGAAACACACAACTTCACTAACATGGAGAAGCTGCAACAGAGAGTAAATATAAATGTGTGATTTTTACTTTTACTAAATCATCTTAAAGCCTGCAAAGTTATAAAATGAATAGTTTTAGCGATTTCTACTAATGTAATTTGTTGAGACAAAAAAAAGAGCATAGATGGTTGCAATGCTGGAAAAAAAAACAATTCCTTTTTCTAATTAAACACAACGTCAAGTTAATTTATAACTGTCAAGTTGAATGTCTTTCTTTGAGATAAATACGATTTAATAAGAGTAAATTTAAATCAGTGTTTTAACCAAATATCGCATAAGACATTTAATGACATAGCCACAGCCGGTCAGCTACTAAACAAAGGCCAAGAGAAACTGAAAAAAAAAATGGCAACTGAGTGATACTTACTGCATCTAAATGCAGAAGTTTTGCAAAACTCTGAATCCTATGCTAAAGGCTAAACTGCACATGGAGAAGCAGGAGAGGAGACAATTTGAAAGTTATAGCCCTTTTCCAACCTGACTTACTCACAAAAATGGTTAGCTGATATGCTAGTTCTCCACAACCACTCTTTGCAGTTTGGCCTCCCCTAAGGCTGTCATTTGCTTTGTCTCTAATCCCACTTTTGTACAGATTTTTGGTAAAGCAATTACTGTAATTCAGTGTCTCATACACCAGCATTCAGGCTATACTCTGAATCAGTAACTTAGAGGTTTTCTTAATAGGAACTTCTTGACAGGCTGACTATTATGGAAACAGAGGTACAACAAATAAAAGGATAGGAGTCTGATTACAAAAACAGAATAGATCAGAGCCTTCAAGTGCAATTTGTCTAATTTGAAATGTAATGGAACTTCTTGAAATGCACCTTGCTTTGGGCTCCAAAACTGATACTTATAAAGAAGCGAGGAAAGTGGAAGAGCTGATATGAGGTACCTTGATCTGGTGAATCCTTCCTAAATCTGCAGGAGAAGCCACAGCATTACTTTTTAGTTCATGTATATC |