ncRNA ID |
osa_circ_039501 |
Species |
Oryza sativa |
Class |
circRNA |
Genome position |
9:17743503-17744102[+] |
Reference genome |
RGAPv7 |
Source |
PlantcircBase
|
Method |
circseq_cup/NA |
Type |
exonic |
Splice junction sequence |
GTGCTCAACGAAACAAGCCTTTGGTGGTTCGATAGGACCCGTCATATCACTCCAAATGCAGTAGTTTCTTCTCCTGATAAGAATGTGACAATTGCAAAAACTTATATGCAGGAATGGTAAAGAATCAGAAGCTATCTGCAAATATACTTACACCAACAACTAAAGCTGCAGATCATGATGTTCCTGTCACTCCTGAAGAG |
Tissues |
root/shoot, root |
Exon boundary |
Yes-Yes |
Splicing signals |
AG-GT |
circRNA sequence |
ATCATGATGTTCCTGTCACTCCTGAAGAGGTGCTCAACGAAACAAGCCTTTGGTGGTTCGATAGGACCCGTCATATCACTCCAAATGCAGTAGTTTCTTCTCCTGATAAGAATGTGACAATTGCAAAAAGTGAGGGGATATGTTACTGGAAGCACTGATACATCTTTGTGGACTGTTTATAACAAAGGTGCGAGGAACTATTGTGGAAATGTTCTACGTGATGGAATGGTAAAGAATCAGAAGCTATCTGCAAATATACTTACACCAACAACTAAAGCTGCAG |
Genomic sequence |
GTGCTCAACGAAACAAGCCTTTGGTGGTTCGATAGGACCCGTCATATCACTCCAAATGCAGTAGTTTCTTCTCCTGATAAGAATGTGACAATTGCAAAAAGGTGCTCAGTTTTTCCAGTTGAATTTGTTGGTGAGACCTAAGGCTTGCTGCATTTACTGATTATTTCTCCTACTGCTTTGCAATCATATCCCTCAGAATTTTGTTGGCTGTGTTGATCAATTAGTTCTTTGTTTTCGTGATTCTTATGAATCTTGTCTATCATCCTTTTTTTTTAAAAAAAAAAATCTTATGGAGAACTGTTATCTGTGTTGATCAATTAGCTTTATTTTCATGCTTTTTTTTCAGTGAGGGGATATGTTACTGGAAGCACTGATACATCTTTGTGGACTGTTTATAACAAAGGTGCGAGGAACTATTGTGGAAATGTTCTACGTGATGGTATGCTGAACCAACAAACATCCAAATTGGATTTTTTTTCTTTACTTACAGTGAGTGGCCTCTTATATGCAGGAATGGTAAAGAATCAGAAGCTATCTGCAAATATACTTACACCAACAACTAAAGCTGCAGATCATGATGTTCCTGTCACTCCTGAAGAG |