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BaseInfo

ncRNA ID novel_gma_miR1235
Species Glycine max
Class miRNA
Genome position Chr17:10052193-10052237 [+]
Reference genome Glycine_max_v2.0
Source SRR1451641
Length 21
Mature sequence(if miRNA) 25 - AUAUAUCCAGUAGAGAAGCUC - 45
Stem-loop(if miRNA) --              A     
  GCUUCUCUACUGGA AUAUAG
  |||||||||||||| |||||A
  CGAAGAGAUGACCU UAUAUG
CU              A     
Stem-loop sequence GCUUCUCUACUGGAAAUAUAGAGUAUAUAUCCAGUAGAGAAGCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006577803.2
ncRNA:21   CUCGAAGAGAUGACCUAUAUA   1
  *|*|||||||||||||*||||
targets:32   CAACUUCUCUACUGGAAAUAU   52

2.5 PREDICTED: Glycine max homeobox protein ATH1-like (LOC100820354), transcript variant X2, mRNA homeobox protein ATH1-like(LOC100820354) coding protein psRNATarget