A ncRNA database for oil producing plants

Search result

ncRNA ID	novel_gma_miR1220
Species	Glycine max
Class	miRNA
Genome position	Chr19:37914801-37914879 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1292924
Length	25
Mature sequence(if miRNA)	1 - UCCAAGGACUGAAUUGCAUUUUAAU - 25
Stem-loop(if miRNA)	---U UG C U AUA AU AAAUGCAAUU GUCC UG AUAUU AUUAAA G \|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\| UUUACGUUAA CAGG AC UAUAG UGAUUU C UAAU GU A C AUC AA
Stem-loop sequence	UAAAUGCAAUUUGGUCCCUGUAUAUUAUAAUUAAAAUGCAAUUUAGUCUAGAUAUCCAAGGACUGAAUUGCAUUUUAAU

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

NM_001254017.2

ncRNA:25	UAAUUUUACGUUAAGUCAGGAACCU	1
	**\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:828	UCAAAAGUGCAAUUCAGUCCUUAGA	852

2.5

Glycine max ribonucleoprotein At2g37220, chloroplastic-like (LOC100812934), mRNA

ribonucleoprotein At2g37220, chloroplastic-like(LOC100812934)

coding protein

BT095924.1

ncRNA:25	UAAUUUUACGUUAAGUCAGGAACCU	1
	**\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:830	UCAAAAGUGCAAUUCAGUCCUUAGA	854

2.5

Soybean clone JCVI-FLGm-20I3 unknown mRNA

coding protein

AK245081.1

ncRNA:25	UAAUUUUACGUUAAGUCAGGAACCU	1
	**\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:824	UCAAAAGUGCAAUUCAGUCCUUAGA	848

2.5

Glycine max cDNA, clone: GMFL01-20-H23

coding protein

XM_014763267.1

ncRNA:25	UAAUUUUACGUUAAGUCAGGAACCU	1
	=*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|
targets:3143	GGCAAAAUACAAUUCAGUCCUUGUA	3167

2.5

PREDICTED: Glycine max TMV resistance protein N-like (LOC100791054), transcript variant X2, mRNA

TMV resistance protein N-like(LOC100791054)

coding protein

XM_006589224.2

ncRNA:25	UAAUUUUACGUUAAGUCAGGAACCU	1
	=*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|
targets:3313	GGCAAAAUACAAUUCAGUCCUUGUA	3337

2.5

PREDICTED: Glycine max TMV resistance protein N-like (LOC100791054), transcript variant X1, mRNA

TMV resistance protein N-like(LOC100791054)

coding protein