ncRNA ID |
osa_circ_039306 |
Species |
Oryza sativa |
Class |
circRNA |
Genome position |
9:16153454-16154026[+] |
Reference genome |
RGAPv7 |
Source |
PlantcircBase
|
Method |
SMALT and Segemehl/circseq_cup/NA |
Type |
exonic |
Splice junction sequence |
GTGATCTTGGGTTAGCTTAGCTAGCTAAATTAAGCTGCGTGCAGCATGGGGCTCCTCGACCAGCTCTGGGACGACACGGTGGCCGGGCCGCGGCCGGACTCGGAGGGCTGGAAGAAGCTGCGCCGTGGGGCGGCGAGGATGGCCGACGGCGTGGACGCCAGCGCCGGCGGCCAGCCGAGAAGCCCCACCGTATACGACTG |
Tissues |
leaf and panicle/root/root |
Exon boundary |
Yes-Yes |
Splicing signals |
AG-GT |
circRNA sequence |
GTGATCTTGGGTTAGCTTAGCTAGCTAAATTAAGCTGCGTGCAGCATGGGGCTCCTCGACCAGCTCTGGGACGACACGGTGGCCGGGCCGCGGCCGGACTCCGGCCTCGGCAAGCTCCGCAAGTACGCCTCCTTCTCCCCTTCCTCCTCCTCCTCGACGATGGCGGCGTCGCCGTCGCCCATCTCGGCGGCGGCGGCGGCGGCCGACGCGCCGGCCGTGACGCGCAGCATCACCATCCTCCGCCCGCCGGCGCTGTCCGTGACGTCGCCGCGCGGCAGCGAGTCGGGCCCCTCCACGCCGTCGTCGCCGGCCAGCGTCCCGGACTCCCCCTTCGGCTCAGCACCGACGCCGAAGGGATCGGAGGGCTGGAAGAAGCTGCGCCGTGGGGCGGCGAGGATGGCCGACGGCGTGGACGCCAGCGCCGGCGGCCAGCCGAGAAGCCCCACCGTATACGACTG |
Genomic sequence |
GTGATCTTGGGTTAGCTTAGCTAGCTAAATTAAGCTGCGTGCAGCATGGGGCTCCTCGACCAGCTCTGGGACGACACGGTGGCCGGGCCGCGGCCGGACTCCGGCCTCGGCAAGCTCCGCAAGTACGCCTCCTTCTCCCCTTCCTCCTCCTCCTCGACGATGGCGGCGTCGCCGTCGCCCATCTCGGCGGCGGCGGCGGCGGCCGACGCGCCGGCCGTGACGCGCAGCATCACCATCCTCCGCCCGCCGGCGCTGTCCGTGACGTCGCCGCGCGGCAGCGAGTCGGGCCCCTCCACGCCGTCGTCGCCGGCCAGCGTCCCGGACTCCCCCTTCGGCTCAGGTGGTGACCAGGCCACCATAATCTCTTCTTGAATCTTGATCTTTTTGCACACGCATATATCGTAATCTCGATCTTAATTATATCTATGCATCGTCGACTTGTGCATGGCATGCAGCACCGACGCCGAAGGGATCGGAGGGCTGGAAGAAGCTGCGCCGTGGGGCGGCGAGGATGGCCGACGGCGTGGACGCCAGCGCCGGCGGCCAGCCGAGAAGCCCCACCGTATACGACTG |