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BaseInfo

ncRNA ID	bra-miR395c-3p
Species	Brassica rapa
Class	miRNA
Genome position	chrA7:18568920-18569029 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	14 - CUGAAGUGUUUGGGGGAACUC - 34
Stem-loop(if miRNA)	GU      UU   UA         UG         U    UAUA      UUUCUA   CGGAUG  UCC  GAGUUCCUC  AGCACUUCA UGGA    ACAUUU      U   ||||||  |||  |||||||||  ||||||||| ||||    ||||||   GCUUAC  AGG  CUCAAGGGG  UUGUGAAGU ACCU    UGUAAA      C --      UC   UC         GU         C    --UA      UUAAAA
Stem-loop sequence	GUCGGAUGUUUCCUAGAGUUCCUCUGAGCACUUCAUUGGAUAUAACAUUUUUUCUAUCAAAAUUAAAUGUAUUCCACUGAAGUGUUUGGGGGAACUCCUGGACUCAUUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009103518.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   |||||||=||||||||||||* targets:399   GAGUUCCUCCAAACACUUCAU   419 Target Full Sequence	2.0	PREDICTED: Brassica rapa ATP sulfurylase 4, chloroplastic (LOC103827954), mRNA	ATP sulfurylase 4, chloroplastic(LOC103827954)	coding protein	psRNATarget
XM_009142693.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   ||||*||=||||||||||||| targets:1096   GAGUGCCUCCAAACACUUCAG   1116 Target Full Sequence	2.0	PREDICTED: Brassica rapa uncharacterized LOC103864919 (LOC103864919), mRNA	uncharacterized LOC103864919(LOC103864919)	coding protein	psRNATarget
XM_009123832.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||=|||||||||||||* targets:139   AAGUUCUCCCAAACACUUCAA   159 Target Full Sequence	2.0	PREDICTED: Brassica rapa sulfate transporter 2.1-like (LOC103846830), transcript variant X2, mRNA	sulfate transporter 2.1-like(LOC103846830)	coding protein	psRNATarget
XM_009127072.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||=|||||||||||||* targets:124   AAGUUCUCCCAAACACUUCAA   144 Target Full Sequence	2.0	PREDICTED: Brassica rapa sulfate transporter 2.1 (LOC103850335), mRNA	sulfate transporter 2.1(LOC103850335)	coding protein	psRNATarget
XM_009123831.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||=|||||||||||||* targets:139   AAGUUCUCCCAAACACUUCAA   159 Target Full Sequence	2.0	PREDICTED: Brassica rapa sulfate transporter 2.1-like (LOC103846830), transcript variant X1, mRNA	sulfate transporter 2.1-like(LOC103846830)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).