Search result

BaseInfo

ncRNA ID	novel_gma_miR1210
Species	Glycine max
Class	miRNA
Genome position	Chr7:8615319-8615398 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451640
Length	22
Mature sequence(if miRNA)	1 - AAUGCAUAAGUUGAUUUUAACU - 22
Stem-loop(if miRNA)	--                   A  U     UGCAU    G   UUAAAAUCAACUUAUGCAU UC GCUUU     AAGU A   ||||||||||||||||||| || |||||     ||||   AAUUUUAGUUGAAUACGUA AG UGAAA     UUCG G UC                   A  U     CAUUU    A
Stem-loop sequence	UUAAAAUCAACUUAUGCAUAUCUGCUUUUGCAUAAGUGAGAGCUUUUUACAAAGUUGAAAUGCAUAAGUUGAUUUUAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006595003.2	ncRNA:22   UCAAUUUUAGUUGAAUACGUAA   1   *||||||||||||||||||=|* targets:4327   UGUUAAAAUCAACUUAUGCGUC   4348 Target Full Sequence	2.5	PREDICTED: Glycine max flowering time control protein FPA-like (LOC100810601), transcript variant X2, mRNA	flowering time control protein FPA-like(LOC100810601)	coding protein	psRNATarget
AK244282.1	ncRNA:22   UCAAUUUUAGUUGAAUACGUAA   1   |*|||||||||*|||||||||* targets:1874   AAUUAAAAUCACCUUAUGCAUC   1895 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-02-J10	NA	coding protein	psRNATarget
XM_003537852.3	ncRNA:22   UCAAUUUUAGUUGAAUACGUAA   1   |*|||||||||*|||||||||* targets:1947   AAUUAAAAUCACCUUAUGCAUC   1968 Target Full Sequence	2.5	PREDICTED: Glycine max cytochrome c biogenesis protein CCS1, chloroplastic (LOC100807003), transcript variant X1, mRNA	cytochrome c biogenesis protein CCS1, chloroplastic(LOC100807003)	coding protein	psRNATarget
HI410449.1	ncRNA:22   UCAAUUUUAGUUGAAUACGU-AA   1   ||||||||||||||||||||-|| targets:8   AGUUAAAAUCAACUUAUGCACUU   30 Target Full Sequence	3.0	Sequence 8574 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242579.1	ncRNA:22   UCAAUUUUAGUUGAAUACGU-AA   1   ||||||||||||||||||||-|| targets:8   AGUUAAAAUCAACUUAUGCACUU   30 Target Full Sequence	3.0	Sequence 8574 from Patent EP2985353	NA	coding protein	psRNATarget
JB170910.1	ncRNA:22   UCAAUUUUAGUUGAAUACGU-AA   1   ||||||||||||||||||||-|| targets:8   AGUUAAAAUCAACUUAUGCACUU   30 Target Full Sequence	3.0	Sequence 8574 from Patent EP2559767	NA	coding protein	psRNATarget
BT095764.1	ncRNA:22   UCAAUUUUAGUUGAAUACGU-AA   1   ||||||||||||||||||||-|| targets:997   AGUUAAAAUCAACUUAUGCACUU   1019 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-15K19 unknown mRNA	NA	coding protein	psRNATarget
XM_003518975.3	ncRNA:22   UCAAUUUUAGUUGAAUACGU-AA   1   ||||||||||||||||||||-|| targets:1047   AGUUAAAAUCAACUUAUGCACUU   1069 Target Full Sequence	3.0	PREDICTED: Glycine max binding partner of ACD11 1 (LOC100805907), transcript variant X3, mRNA	binding partner of ACD11 1(LOC100805907)	coding protein	psRNATarget
XM_006574485.2	ncRNA:22   UCAAUUUUAGUUGAAUACGU-AA   1   ||||||||||||||||||||-|| targets:1068   AGUUAAAAUCAACUUAUGCACUU   1090 Target Full Sequence	3.0	PREDICTED: Glycine max binding partner of ACD11 1 (LOC100805907), transcript variant X2, mRNA	binding partner of ACD11 1(LOC100805907)	coding protein	psRNATarget
XM_006574484.2	ncRNA:22   UCAAUUUUAGUUGAAUACGU-AA   1   ||||||||||||||||||||-|| targets:1080   AGUUAAAAUCAACUUAUGCACUU   1102 Target Full Sequence	3.0	PREDICTED: Glycine max binding partner of ACD11 1 (LOC100805907), transcript variant X1, mRNA	binding partner of ACD11 1(LOC100805907)	coding protein	psRNATarget
XM_006593880.2	ncRNA:22   UCAAUUUUAGUUGAAUACGU-AA   1   ||||||||||||||||||||-|| targets:2974   AGUUAAAAUCAACUUAUGCACUU   2996 Target Full Sequence	3.0	PREDICTED: Glycine max phospholipid:diacylglycerol acyltransferase 1-like (LOC100779225), transcript variant X3, mRNA	phospholipid:diacylglycerol acyltransferase 1-like(LOC100779225)	coding protein	psRNATarget
XM_003541248.3	ncRNA:22   UCAAUUUUAGUUGAAUACGU-AA   1   ||||||||||||||||||||-|| targets:3128   AGUUAAAAUCAACUUAUGCACUU   3150 Target Full Sequence	3.0	PREDICTED: Glycine max phospholipid:diacylglycerol acyltransferase 1-like (LOC100779225), transcript variant X1, mRNA	phospholipid:diacylglycerol acyltransferase 1-like(LOC100779225)	coding protein	psRNATarget
BT094855.1	ncRNA:22   UCAAUUUUAGUUGAAUACGU-AA   1   **||||||||||||||||||-|| targets:18   UUUUAAAAUCAACUUAUGCACUU   40 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-6E24 unknown mRNA	NA	coding protein	psRNATarget