ncRNA ID | novel_gma_miR1189 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr2:28553852-28553938 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1294479;SRR2045232;SRR2045236;SRR2045237 |
Length | 22 |
Mature sequence(if miRNA) | 66 - UUGCUUGGUGUAGUUCGGGUAC - 87 |
Stem-loop(if miRNA) |
--   C              G      -       -- UG -   U   UUG UUGGUGUAGUUCGG UACUUU AUUUAUU  U  U GUU G   ||| |||||||||||||| |||||| |||||||  |  | |||   AAC AACCACAUCAAGCC AUGAAA UAAGUAA  A  A CGG G CA   U              -      C       UC GU U   U |
Stem-loop sequence | UUGCUUGGUGUAGUUCGGGUACUUUAUUUAUUUUGUGUUUGGUGGCUAUGACUAAUGAAUCAAAGUACCGAACUACACCAAUCAAAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003534036.3 |
|
2.5 | PREDICTED: Glycine max protein argonaute 1 (LOC100780375), transcript variant X1, mRNA | protein argonaute 1(LOC100780375) | coding protein | psRNATarget | |||||||||
XM_003548263.3 |
|
2.5 | PREDICTED: Glycine max protein argonaute 1-like (LOC100778754), mRNA | protein argonaute 1-like(LOC100778754) | coding protein | psRNATarget | |||||||||
AK286252.1 |
|
2.5 | Glycine max cDNA, clone: GMFL01-24-N15 | NA | coding protein | psRNATarget |