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BaseInfo

ncRNA ID novel_gma_miR1189
Species Glycine max
Class miRNA
Genome position Chr2:28553852-28553938 [-]
Reference genome Glycine_max_v2.0
Source SRR1294479;SRR2045232;SRR2045236;SRR2045237
Length 22
Mature sequence(if miRNA) 66 - UUGCUUGGUGUAGUUCGGGUAC - 87
Stem-loop(if miRNA) --   C              G      -       -- UG -   U
  UUG UUGGUGUAGUUCGG UACUUU AUUUAUU  U  U GUU G
  ||| |||||||||||||| |||||| |||||||  |  | |||
  AAC AACCACAUCAAGCC AUGAAA UAAGUAA  A  A CGG G
CA   U              -      C       UC GU U   U
Stem-loop sequence UUGCUUGGUGUAGUUCGGGUACUUUAUUUAUUUUGUGUUUGGUGGCUAUGACUAAUGAAUCAAAGUACCGAACUACACCAAUCAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003534036.3
ncRNA:22   CAUGGGCUUGAUGUGGUUCGUU   1
  |*||||||=||=||||||||||
targets:571   GCACCCGAGCUGCACCAAGCAA   592

2.5 PREDICTED: Glycine max protein argonaute 1 (LOC100780375), transcript variant X1, mRNA protein argonaute 1(LOC100780375) coding protein psRNATarget
XM_003548263.3
ncRNA:22   CAUGGGCUUGAUGUGGUUCGUU   1
  |*||||||=||=||||||||||
targets:527   GCACCCGAGCUGCACCAAGCAA   548

2.5 PREDICTED: Glycine max protein argonaute 1-like (LOC100778754), mRNA protein argonaute 1-like(LOC100778754) coding protein psRNATarget
AK286252.1
ncRNA:22   CAUGGGCUUGAUGUGGUUCGUU   1
  |*||||||=||=||||||||||
targets:572   GCACCCGAGCUGCACCAAGCAA   593

2.5 Glycine max cDNA, clone: GMFL01-24-N15 NA coding protein psRNATarget