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BaseInfo

ncRNA ID novel_gma_miR1180
Species Glycine max
Class miRNA
Genome position Chr2:31721297-31721434 [+]
Reference genome Glycine_max_v2.0
Source SRR1294479
Length 24
Mature sequence(if miRNA) 1 - GUGAAGGAGCCGUCUUAGAAAUGU - 24
Stem-loop(if miRNA) --  GA    GC            -   CGAAAAAAA          AAA              AUU   U
  GU  AGGA  CGUCUUAGAAAU GUA         AAUAAAAAAA   UCAUUUCUAAGAUG   UUG C
  ||  ||||  |||||||||||| |||         ||||||||||   ||||||||||||||   ||| C
  UA  UCCU  GCAGAAUCUUUA CAU         UUAUUUUUUU   AGUAAAGAUUCUGU   AAC A
AA  AG    UA            A   --AAAAAAA          GUC              --C   A
Stem-loop sequence GUGAAGGAGCCGUCUUAGAAAUGUACGAAAAAAAAAUAAAAAAAAAAUCAUUUCUAAGAUGAUUUUGUCCAACAACUGUCUUAGAAAUGACUGUUUUUUUAUUAAAAAAAUACAAUUUCUAAGACGAUUCCUGAAUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006587752.2
ncRNA:24   UGUAAAGAUUCUGCCGAGGAAGUG   1
  ===*||||||*||*||||||||||
targets:173   GUGCUUCUAAAACAGCUCCUUCAC   196

2.5 PREDICTED: Glycine max ALBINO3-like protein 2, chloroplastic (LOC102661649), mRNA ALBINO3-like protein 2, chloroplastic(LOC102661649) coding protein psRNATarget