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BaseInfo

ncRNA ID	bra-miR159a
Species	Brassica rapa
Class	miRNA
Genome position	chrA7:15273666-15273850 [+]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	163 - UUUGGAUUGAAGGGAGCUCUA - 183
Stem-loop(if miRNA)	AA            A         C      -UU    ------      AGA      G  A  C    A UC     -    CU       AUA   GUAGGGCUCCUU UAGUUCAAA GAGAGU   AGCA      GGGUAA   AAAGCU CU AG UAUG A  CCAUA AGCC  AAUCCUU   U   |||||||||||| ||||||||| ||||||   ||||      ||||||   |||||| || || |||| |  ||||| ||||  |||||||   A   CAUCUCGAGGGA GUUAGGUUU UUCUCA   UCGU      CCCGUU   UUUCGA GA UC AUAC U  GGUAU UUGG  UUAGGAA   U -A            A         C      UUU    UAAUUU      CAA      G  C  U    A UC     A    -U       AAA
Stem-loop sequence	AAGUAGGGCUCCUUAUAGUUCAAACGAGAGUUUAGCAGGGUAAAGAAAAGCUGCUAAGCUAUGAAUCCCAUAAGCCCUAAUCCUUAUAUAUAAAAAGGAUUUGGUUAUAUGGCUUACAUAUCUCAGGAGCUUUAACUUGCCCUUUAAUUGCUUUUACUCUUCUUUGGAUUGAAGGGAGCUCUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009128793.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *||||||||||||||*||||| targets:1109   AAGAGCUCCCUUCAAACCAAA   1129 Target Full Sequence	1.5	PREDICTED: Brassica rapa transcription factor MYB28-like (LOC103851911), mRNA	transcription factor MYB28-like(LOC103851911)	coding protein	psRNATarget
XM_009134603.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |||||||=||||||=|||||| targets:1145   UAGAGCUUCCUUCAGUCCAAA   1165 Target Full Sequence	2.5	PREDICTED: Brassica rapa myb-related protein 306 (LOC103857427), mRNA	myb-related protein 306(LOC103857427)	coding protein	psRNATarget
XM_018653318.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:804   UGGAGCUCCCUUCAUUCCAAU   824 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor MYB104 (LOC103829641), mRNA	NA	coding protein	psRNATarget
XM_009122890.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1110   UGGAGCUCCCUUCAUUCCAAU   1130 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB-like (LOC103845973), transcript variant X3, mRNA	transcription factor GAMYB-like(LOC103845973)	coding protein	psRNATarget
XM_009122888.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1110   UGGAGCUCCCUUCAUUCCAAU   1130 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB-like (LOC103845973), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC103845973)	coding protein	psRNATarget
XM_018655732.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1118   UGGAGCUCCCUUCAUUCCAAU   1138 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB-like (LOC103845973), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_009148477.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1138   UGGAGCUCCCUUCAUUCCAAU   1158 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB (LOC103870347), transcript variant X3, mRNA	transcription factor GAMYB(LOC103870347)	coding protein	psRNATarget
XM_009148476.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1137   UGGAGCUCCCUUCAUUCCAAU   1157 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB (LOC103870347), transcript variant X1, mRNA	transcription factor GAMYB(LOC103870347)	coding protein	psRNATarget
XM_009121778.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *||||=|||||||||*||||| targets:1160   AAGAGUUCCCUUCAAACCAAA   1180 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor MYB26-like (LOC103844949), mRNA	transcription factor MYB26-like(LOC103844949)	coding protein	psRNATarget
XM_009135672.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1319   UGGAGCUCCCUUCAUUCCAAU   1339 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor MYB104-like (LOC103858339), transcript variant X1, mRNA	transcription factor MYB104-like(LOC103858339)	coding protein	psRNATarget
XM_018657195.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1553   UGGAGCUCCCUUCAUUCCAAU   1573 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor MYB104-like (LOC103858339), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018659244.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1578   UGGAGCUCCCUUCAUUCCAAU   1598 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB (LOC103870347), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_009134721.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ||||||*||||||||*||||| targets:658   UAGAGCCCCCUUCAAACCAAA   678 Target Full Sequence	2.5	PREDICTED: Brassica rapa protein SPEAR2 (LOC103857517), transcript variant X3, mRNA	protein SPEAR2(LOC103857517)	coding protein	psRNATarget
XM_009134720.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ||||||*||||||||*||||| targets:658   UAGAGCCCCCUUCAAACCAAA   678 Target Full Sequence	2.5	PREDICTED: Brassica rapa protein SPEAR2 (LOC103857517), transcript variant X2, mRNA	protein SPEAR2(LOC103857517)	coding protein	psRNATarget
XM_009134719.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   ||||||*||||||||*||||| targets:658   UAGAGCCCCCUUCAAACCAAA   678 Target Full Sequence	2.5	PREDICTED: Brassica rapa protein SPEAR2 (LOC103857517), transcript variant X1, mRNA	protein SPEAR2(LOC103857517)	coding protein	psRNATarget
XM_009134163.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *|||*||||||||||*||||| targets:1139   AAGACCUCCCUUCAAACCAAA   1159 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor MYB26 (LOC103857012), mRNA	transcription factor MYB26(LOC103857012)	coding protein	psRNATarget
XM_009151997.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *=*|||||||*|||||||||| targets:508   CGAAGCUCCCCUCAAUCCAAA   528 Target Full Sequence	2.5	PREDICTED: Brassica rapa actin-12 (LOC103873596), mRNA	actin-12(LOC103873596)	coding protein	psRNATarget

Reference

1	PMID:18558089 "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"; He XF, Fang YY, Feng L, Guo HS; FEBS Lett. 582:2445-2452(2008).