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BaseInfo

ncRNA ID bra-miR9557-3p
Species Brassica rapa
Class miRNA
Genome position chrA7:1046108-1046295 [-]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 4 - GCUGAGUUGGAACGCAAAAUC - 24
Stem-loop(if miRNA) GCCGCUUUAUUCUUCACUUAC CAU     CUUUACAGUUCACACUGAUUUUGCGUUUCAACUCGGUCCUCAUUUCUUUAUAACGAAGUGGAGGAACAAAAAG
                     G   GCUGU                                                                         A
                     |   |||||                                                                         U
                     C   UAAAA                                                                         G
------------------UUU ---     CGCAAGGUUGAGUCGGGAGUAAAGAAAAUUGAACGUCGAAAGUAAGAGAAGGAGAAGUUACAAGAAGACUUUU
Stem-loop sequence GCCGCUUUAUUCUUCACUUACGCAUGCUGUCUUUACAGUUCACACUGAUUUUGCGUUUCAACUCGGUCCUCAUUUCUUUAUAACGAAGUGGAGGAACAAAAAGAUGUUUUCAGAAGAACAUUGAAGAGGAAGAGAAUGAAAGCUGCAAGUUAAAAGAAAUGAGGGCUGAGUUGGAACGCAAAAUCUUU

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).