ncRNA ID | bra-miR9557-3p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA7:1046108-1046295 [-] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 4 - GCUGAGUUGGAACGCAAAAUC - 24 |
Stem-loop(if miRNA) |
GCCGCUUUAUUCUUCACUUAC CAU     CUUUACAGUUCACACUGAUUUUGCGUUUCAACUCGGUCCUCAUUUCUUUAUAACGAAGUGGAGGAACAAAAAG                      G   GCUGU                                                                         A                      |   |||||                                                                         U                      C   UAAAA                                                                         G ------------------UUU ---     CGCAAGGUUGAGUCGGGAGUAAAGAAAAUUGAACGUCGAAAGUAAGAGAAGGAGAAGUUACAAGAAGACUUUU |
Stem-loop sequence | GCCGCUUUAUUCUUCACUUACGCAUGCUGUCUUUACAGUUCACACUGAUUUUGCGUUUCAACUCGGUCCUCAUUUCUUUAUAACGAAGUGGAGGAACAAAAAGAUGUUUUCAGAAGAACAUUGAAGAGGAAGAGAAUGAAAGCUGCAAGUUAAAAGAAAUGAGGGCUGAGUUGGAACGCAAAAUCUUU |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |