Search result

BaseInfo

ncRNA ID	novel_gma_miR1160
Species	Glycine max
Class	miRNA
Genome position	Chr11:1010728-1010832 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451639;SRR1451641;SRR1451648;SRR1451605
Length	21
Mature sequence(if miRNA)	1 - UCAGACUUUUCUCAUAAGUUG - 21
Stem-loop(if miRNA)	--            C        A      C       --GA    CUCAUCU   UCAGACUUUUCU AUAAGUUG AAUCAA UUAUUCA    AACU       A   |||||||||||| |||||||| |||||| |||||||    ||||       U   AGUUUGAAGAGG UAUUCAAU UUAGUU AAUAAGU    UUGA       U UU            U        A      C       GAAG    AAACCUU
Stem-loop sequence	UCAGACUUUUCUCAUAAGUUGAAAUCAACUUAUUCAGAAACUCUCAUCUAUUUUCCAAAAGUUGAAGUGAAUAACUUGAUUAUAACUUAUUGGAGAAGUUUGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006587911.2	ncRNA:21   GUUGAAUACUCUUUUCAGACU   1   *||||||||=||||||||||| targets:294   GAACUUAUGGGAAAAGUCUGA   314 Target Full Sequence	1.5	PREDICTED: Glycine max lysine-specific demethylase JMJ703-like (LOC100795804), mRNA	lysine-specific demethylase JMJ703-like(LOC100795804)	coding protein	psRNATarget
XM_014771872.1	ncRNA:21   GUUGAAUACUCUUUUCAGACU   1   *|||*||||=||||||||||| targets:937   GAACAUAUGGGAAAAGUCUGA   957 Target Full Sequence	2.5	PREDICTED: Glycine max putative lysine-specific demethylase JMJ16 (LOC100804864), transcript variant X6, mRNA	putative lysine-specific demethylase JMJ16(LOC100804864)	coding protein	psRNATarget
XM_014771873.1	ncRNA:21   GUUGAAUACUCUUUUCAGACU   1   *|||*||||=||||||||||| targets:758   GAACAUAUGGGAAAAGUCUGA   778 Target Full Sequence	2.5	PREDICTED: Glycine max putative lysine-specific demethylase JMJ16 (LOC100804864), transcript variant X7, mRNA	putative lysine-specific demethylase JMJ16(LOC100804864)	coding protein	psRNATarget
XM_006604432.2	ncRNA:21   GUUGAAUACUCUUUUCAGACU   1   *|||*||||=||||||||||| targets:821   GAACAUAUGGGAAAAGUCUGA   841 Target Full Sequence	2.5	PREDICTED: Glycine max putative lysine-specific demethylase JMJ16 (LOC100804864), transcript variant X5, mRNA	putative lysine-specific demethylase JMJ16(LOC100804864)	coding protein	psRNATarget
XM_014771874.1	ncRNA:21   GUUGAAUACUCUUUUCAGACU   1   *|||*||||=||||||||||| targets:849   GAACAUAUGGGAAAAGUCUGA   869 Target Full Sequence	2.5	PREDICTED: Glycine max putative lysine-specific demethylase JMJ16 (LOC100804864), transcript variant X8, mRNA	putative lysine-specific demethylase JMJ16(LOC100804864)	coding protein	psRNATarget
XM_014771868.1	ncRNA:21   GUUGAAUACUCUUUUCAGACU   1   *|||*||||=||||||||||| targets:936   GAACAUAUGGGAAAAGUCUGA   956 Target Full Sequence	2.5	PREDICTED: Glycine max putative lysine-specific demethylase JMJ16 (LOC100804864), transcript variant X1, mRNA	putative lysine-specific demethylase JMJ16(LOC100804864)	coding protein	psRNATarget
XM_014771870.1	ncRNA:21   GUUGAAUACUCUUUUCAGACU   1   *|||*||||=||||||||||| targets:964   GAACAUAUGGGAAAAGUCUGA   984 Target Full Sequence	2.5	PREDICTED: Glycine max putative lysine-specific demethylase JMJ16 (LOC100804864), transcript variant X3, mRNA	putative lysine-specific demethylase JMJ16(LOC100804864)	coding protein	psRNATarget
XM_014771869.1	ncRNA:21   GUUGAAUACUCUUUUCAGACU   1   *|||*||||=||||||||||| targets:989   GAACAUAUGGGAAAAGUCUGA   1009 Target Full Sequence	2.5	PREDICTED: Glycine max putative lysine-specific demethylase JMJ16 (LOC100804864), transcript variant X2, mRNA	putative lysine-specific demethylase JMJ16(LOC100804864)	coding protein	psRNATarget
XM_014771871.1	ncRNA:21   GUUGAAUACUCUUUUCAGACU   1   *|||*||||=||||||||||| targets:1017   GAACAUAUGGGAAAAGUCUGA   1037 Target Full Sequence	2.5	PREDICTED: Glycine max putative lysine-specific demethylase JMJ16 (LOC100804864), transcript variant X4, mRNA	putative lysine-specific demethylase JMJ16(LOC100804864)	coding protein	psRNATarget
XM_014766605.1	ncRNA:21   GUUGAAUACUCUUUUCAGACU   1   |*||||=||||||||||*||| targets:246   CUACUUGUGAGAAAAGUAUGA   266 Target Full Sequence	2.5	PREDICTED: Glycine max magnesium transporter MRS2-5 (LOC100803935), transcript variant X2, mRNA	magnesium transporter MRS2-5(LOC100803935)	coding protein	psRNATarget
XM_006574884.2	ncRNA:21   GUUGAAUACUCUUUUCAGACU   1   |*||||=||||||||||*||| targets:250   CUACUUGUGAGAAAAGUAUGA   270 Target Full Sequence	2.5	PREDICTED: Glycine max magnesium transporter MRS2-5 (LOC100803935), transcript variant X3, mRNA	magnesium transporter MRS2-5(LOC100803935)	coding protein	psRNATarget
XM_006574883.2	ncRNA:21   GUUGAAUACUCUUUUCAGACU   1   |*||||=||||||||||*||| targets:434   CUACUUGUGAGAAAAGUAUGA   454 Target Full Sequence	2.5	PREDICTED: Glycine max magnesium transporter MRS2-5 (LOC100803935), transcript variant X1, mRNA	magnesium transporter MRS2-5(LOC100803935)	coding protein	psRNATarget