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BaseInfo

ncRNA ID novel_gma_miR1158
Species Glycine max
Class miRNA
Genome position Chr10:2293098-2293183 [+]
Reference genome Glycine_max_v2.0
Source SRR1451639
Length 21
Mature sequence(if miRNA) 1 - UCUUAUAUUUCUUUCGGAAUG - 21
Stem-loop(if miRNA) --UC       U            CUAU   --U    -  GAA
    UUAUAUU CUUUCGGAAUGA    UCU   AUUC CG   G
    ||||||| ||||||||||||    |||   |||| ||   C
    AGUAUAA GAAGGCCUUACU    AGA   UAAG GC   A
AAAA       C            UACU   CUC    A  AUA
Stem-loop sequence UCUUAUAUUUCUUUCGGAAUGACUAUUCUUAUUCCGGAAGCAAUACGAGAAUCUCAGAUCAUUCAUUCCGGAAGCAAUAUGAAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006582385.2
ncRNA:21   GUAAGGCUUUCUUUAUAUUCU   1
  =*|||||||||||||||*|||
targets:427   UCUUCCGAAAGAAAUAUCAGA   447

1.5 PREDICTED: Glycine max UPF0301 protein Cpha266_0885 (LOC100796425), transcript variant X2, mRNA UPF0301 protein Cpha266_0885(LOC100796425) coding protein psRNATarget
XM_006597948.2
ncRNA:21   GUAAGGCUUUCUUUAUAUUCU   1
  |*||*||=||||||||||||*
targets:1065   CUUUGCGGAAGAAAUAUAAGC   1085

3.0 PREDICTED: Glycine max SART-1 family protein DOT2-like (LOC100787646), transcript variant X2, mRNA SART-1 family protein DOT2-like(LOC100787646) coding protein psRNATarget
XM_006597947.2
ncRNA:21   GUAAGGCUUUCUUUAUAUUCU   1
  |*||*||=||||||||||||*
targets:1423   CUUUGCGGAAGAAAUAUAAGC   1443

3.0 PREDICTED: Glycine max SART-1 family protein DOT2-like (LOC100787646), transcript variant X1, mRNA SART-1 family protein DOT2-like(LOC100787646) coding protein psRNATarget