ncRNA ID | novel_gma_miR1158 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr10:2293098-2293183 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451639 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UCUUAUAUUUCUUUCGGAAUG - 21 |
Stem-loop(if miRNA) |
--UC       U            CUAU   --U    -  GAA     UUAUAUU CUUUCGGAAUGA    UCU   AUUC CG   G     ||||||| ||||||||||||    |||   |||| ||   C     AGUAUAA GAAGGCCUUACU    AGA   UAAG GC   A AAAA       C            UACU   CUC    A  AUA |
Stem-loop sequence | UCUUAUAUUUCUUUCGGAAUGACUAUUCUUAUUCCGGAAGCAAUACGAGAAUCUCAGAUCAUUCAUUCCGGAAGCAAUAUGAAAAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006582385.2 |
|
1.5 | PREDICTED: Glycine max UPF0301 protein Cpha266_0885 (LOC100796425), transcript variant X2, mRNA | UPF0301 protein Cpha266_0885(LOC100796425) | coding protein | psRNATarget | |||||||||
XM_006597948.2 |
|
3.0 | PREDICTED: Glycine max SART-1 family protein DOT2-like (LOC100787646), transcript variant X2, mRNA | SART-1 family protein DOT2-like(LOC100787646) | coding protein | psRNATarget | |||||||||
XM_006597947.2 |
|
3.0 | PREDICTED: Glycine max SART-1 family protein DOT2-like (LOC100787646), transcript variant X1, mRNA | SART-1 family protein DOT2-like(LOC100787646) | coding protein | psRNATarget |