| ncRNA ID | bra-miR9557-5p |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | chrA7:1046108-1046295 [-] |
| Reference genome | Brapa_1.1 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 120 - UUUUGCGUUUCAACUCGGUCC - 140 |
| Stem-loop(if miRNA) |
GCCGCUUUAUUCUUCACUUAC CAU CUUUACAGUUCACACUGAUUUUGCGUUUCAACUCGGUCCUCAUUUCUUUAUAACGAAGUGGAGGAACAAAAAG G GCUGU A | ||||| U C UAAAA G ------------------UUU --- CGCAAGGUUGAGUCGGGAGUAAAGAAAAUUGAACGUCGAAAGUAAGAGAAGGAGAAGUUACAAGAAGACUUUU |
| Stem-loop sequence | GCCGCUUUAUUCUUCACUUACGCAUGCUGUCUUUACAGUUCACACUGAUUUUGCGUUUCAACUCGGUCCUCAUUUCUUUAUAACGAAGUGGAGGAACAAAAAGAUGUUUUCAGAAGAACAUUGAAGAGGAAGAGAAUGAAAGCUGCAAGUUAAAAGAAAUGAGGGCUGAGUUGGAACGCAAAAUCUUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009144987.2 |
|
2.5 | PREDICTED: Brassica rapa taxadien-5-alpha-ol O-acetyltransferase-like (LOC103866967), mRNA | taxadien-5-alpha-ol O-acetyltransferase-like(LOC103866967) | coding protein | psRNATarget |
| 1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |