Search result

BaseInfo

ncRNA ID ath-miR417
Species Arabidopsis thaliana
Class miRNA
Genome position chr2:13708748-13708864 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 20 - GAAGGUAGUGAAUUUGUUCGA - 40
Stem-loop(if miRNA)         U   -AA  -GG  AA    -CG      UUU           UC  CUU   GA
AAAUAUAU CAA   GU   UC  AACA   UCACUA   CCUUUAUGUUU  CC   AUU  U
|||||||| |||   ||   ||  ||||   ||||||   |||||||||||  ||   |||
UUUAUAUA GUU   UA   AG  UUGU   AGUGAU   GGAAGUACAAA  GG   UAA  G
        -   GUA  AUA  -C    UUA      ---           UU  ---   AG
Stem-loop sequence AAAUAUAUUCAAAAGUGGUCAAAACACGUCACUAUUUCCUUUAUGUUUUCCCCUUAUUGAUGGAAAUGGUUAAACAUGAAGGUAGUGAAUUUGUUCGAAUAAUAUGUUGAUAUAUUU

Reference

1 PMID:15345049
"Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets";
Wang XJ, Reyes JL, Chua NH, Gaasterland T;
Genome Biol. 5:R65(2004).
2 PMID:16669754
"MicroRNAS and their regulatory roles in plants";
Jones-Rhoades MW, Bartel DP, Bartel B;
Annu Rev Plant Biol. 57:19-53(2006).