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BaseInfo

ncRNA ID	bra-miR1885a
Species	Brassica rapa
Class	miRNA
Genome position	chrA6:25298379-25298698 [+]
Reference genome	Brapa_1.1
Source	miRBase
Length	22
Mature sequence(if miRNA)	217 - CAUCAAUGAAAGGUAUGAUUCC - 238
Stem-loop(if miRNA)	CAU   -  C    C        U -U            C    U      A       C   -UAAAAAA          A          -          AAU  A          AGAAUGAUACUG     -  ACAUUCGAUUAGAUGCGAUAAUCUUAUC    CCU GU UUCA GAGCUUCC C  AGAAGAUGUGCG AGAG CUUUCU AGUCACA UCA        UUCAAAGAAA GGAAUCAUAC UUUCAUUGAU   GA AUCAAUAGAG            AGCUC UU                            C    ||| || |||| |||||||| |  |||||||||||| |||| |||||| ||||||| |||        |||||||||| |||||||||| ||||||||||   || ||||||||||            ||||| ||                            U    GGA CA AAGU CUCGAAGG G  UCUUCUACAUGC UCUC GAAAGA UCAGUGU AGU        AAGUUUCUUU CCUUAGUAUG AAAGUAACUA   CU UAGUUAUCUC            CUACU GG                            C GAU   A  A    A        C CC            A    C      A       A   UUUCACUA          C          G          CUU  C          ------------     A  UAACCAGUAGUCGAGAAUGUUCGUUAAU
Stem-loop sequence	CAUCCUGUCUUCACGAGCUUCCUCUAGAAGAUGUGCGCAGAGUCUUUCUAAGUCACACUCAUAAAAAAUUCAAAGAAAAGGAAUCAUACUUUCAUUGAUAAUGAAAUCAAUAGAGAGAAUGAUACUGAGCUCUUACAUUCGAUUAGAUGCGAUAAUCUUAUCCUCUAAUUGCUUGUAAGAGCUGAUGACCAAUGGAUCAUCCUCUAUUGAUCUCUUCAUCAAUGAAAGGUAUGAUUCCCUUUCUUUGAAAUCACUUUUGAAUGUGACUAAGAAAGCCUCUACGUACAUCUUCUCCGCGGAAGCUCAUGAAAACAAGGUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009115088.2	ncRNA:22   CCUUAGUAUGGAAAGUAACUAC   1   |||||||||||||||||||||| targets:311   GGAAUCAUACCUUUCAUUGAUG   332 Target Full Sequence	0.0	PREDICTED: Brassica rapa disease resistance protein TAO1-like (LOC103838637), mRNA	disease resistance protein TAO1-like(LOC103838637)	coding protein	psRNATarget
XM_018652518.1	ncRNA:22   CCUUAGUAUGGAAAGUAACUAC   1   |||||||||||||||||||||| targets:1702   GGAAUCAUACCUUUCAUUGAUG   1723 Target Full Sequence	0.0	PREDICTED: Brassica rapa putative UDP-arabinose 4-epimerase 4 (LOC103827897), mRNA	NA	coding protein	psRNATarget
XM_009128023.2	ncRNA:22   CCUUAGUAUGGAAAGUAACUAC   1   *||||||||||||||||||||* targets:252   CGAAUCAUACCUUUCAUUGAUA   273 Target Full Sequence	1.0	PREDICTED: Brassica rapa disease resistance protein TAO1-like (LOC103851187), transcript variant X1, mRNA	disease resistance protein TAO1-like(LOC103851187)	coding protein	psRNATarget
XM_009128024.2	ncRNA:22   CCUUAGUAUGGAAAGUAACUAC   1   *||||||||||||||||||||* targets:252   CGAAUCAUACCUUUCAUUGAUA   273 Target Full Sequence	1.0	PREDICTED: Brassica rapa disease resistance protein TAO1-like (LOC103851187), transcript variant X2, mRNA	disease resistance protein TAO1-like(LOC103851187)	coding protein	psRNATarget
XM_018656823.1	ncRNA:22   CCUUAGUAUGGAAAGUAACUAC   1   |||||||||||||||=|||||* targets:257   GGAAUCAUACCUUUCGUUGAUA   278 Target Full Sequence	2.5	PREDICTED: Brassica rapa disease resistance protein TAO1-like (LOC103851212), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_009128057.2	ncRNA:22   CCUUAGUAUGGAAAGUAACUAC   1   |||||||||||||||=|||||* targets:257   GGAAUCAUACCUUUCGUUGAUA   278 Target Full Sequence	2.5	PREDICTED: Brassica rapa disease resistance protein TAO1-like (LOC103851212), transcript variant X1, mRNA	disease resistance protein TAO1-like(LOC103851212)	coding protein	psRNATarget

Reference

1	PMID:18558089 "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"; He XF, Fang YY, Feng L, Guo HS; FEBS Lett. 582:2445-2452(2008).
2	PMID:22025521 "Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa"; Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y; J Exp Bot. 63:1025-1038(2012).