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BaseInfo

ncRNA ID	novel_gma_miR1139
Species	Glycine max
Class	miRNA
Genome position	Chr3:6279998-6280201 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451639;SRR1451653;SRR1294484;SRR3160568;SRR1451610;SRR1451615;SRR1451621
Length	24
Mature sequence(if miRNA)	1 - AUUGGUCAGGACUAUUUUUUAGCC - 24
Stem-loop(if miRNA)	--    GU    A        U       U  -UA       U    UU  CAA      ---------CCAA   UGUUUUUCGGCCGACAUCGGGUAGGUUUUAUU   AUUG  CAGG CUAUUUUU AGCCAAC UC   CUAGAAA UUUU  GU   CGUUGA             UGA                                G   ||||  |||| |||||||| ||||||| ||   ||||||| ||||  ||   ||||||             |||   UAAC  GUUC GAUAAAAA UCGGUUG AG   GAUUUUU AGGA  CG   GCAACU             GGU                                G UG    UG    C        -       C  CCG       U    -U  UAA      AUGUUUUUAGAUG   UAUAGCCGAUUUUUAUCGAACCAGCUACGGUU
Stem-loop sequence	AUUGGUCAGGACUAUUUUUUAGCCAACUUCUACUAGAAAUUUUUUUGUCAACGUUGACCAAUGAUGUUUUUCGGCCGACAUCGGGUAGGUUUUAUUGGUUGGCAUCGACCAAGCUAUUUUUAGCCGAUAUUGGGUAGAUUUUUGUAUCAACGAAUGCUAGGAUUUUUUAGGCCGACGUUGGCUAAAAAUAGCCUUGGUCAAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014765741.1	ncRNA:24   CCGAUUUUUUAUCAGGACUGGUUA   1   *****|||||||||=||||||||| targets:1093   AAAAUAAAAAUAGUUCUGACCAAU   1116 Target Full Sequence	1.5	PREDICTED: Glycine max FIP1[III]-like protein (LOC106795505), mRNA	FIP1[III]-like protein(LOC106795505)	coding protein	psRNATarget
XM_006597640.2	ncRNA:24   CCGAUUUUUUAUCAGGACUGGUUA   1   *****=||||||||=||||||||| targets:3248   AAAAUGAAAAUAGUUCUGACCAAU   3271 Target Full Sequence	2.5	PREDICTED: Glycine max FIP1[III]-like protein (LOC100816009), transcript variant X3, mRNA	FIP1[III]-like protein(LOC100816009)	coding protein	psRNATarget
XM_006597641.2	ncRNA:24   CCGAUUUUUUAUCAGGACUGGUUA   1   *****=||||||||=||||||||| targets:3248   AAAAUGAAAAUAGUUCUGACCAAU   3271 Target Full Sequence	2.5	PREDICTED: Glycine max FIP1[III]-like protein (LOC100816009), transcript variant X4, mRNA	FIP1[III]-like protein(LOC100816009)	coding protein	psRNATarget
XM_014768179.1	ncRNA:24   CCGAUUUUUUAUCAGGACUGGUUA   1   *****=||||||||=||||||||| targets:3252   AAAAUGAAAAUAGUUCUGACCAAU   3275 Target Full Sequence	2.5	PREDICTED: Glycine max FIP1[III]-like protein (LOC100816009), transcript variant X2, mRNA	FIP1[III]-like protein(LOC100816009)	coding protein	psRNATarget
XM_006597639.2	ncRNA:24   CCGAUUUUUUAUCAGGACUGGUUA   1   *****=||||||||=||||||||| targets:3257   AAAAUGAAAAUAGUUCUGACCAAU   3280 Target Full Sequence	2.5	PREDICTED: Glycine max FIP1[III]-like protein (LOC100816009), transcript variant X1, mRNA	FIP1[III]-like protein(LOC100816009)	coding protein	psRNATarget