ncRNA ID |
osa_circ_038427 |
Species |
Oryza sativa |
Class |
circRNA |
Genome position |
9:1222598-1223852[-] |
Reference genome |
RGAPv7 |
Source |
PlantcircBase
|
Method |
SMALT and Segemehl/NA |
Type |
exonic |
Splice junction sequence |
CTTCCAAGTACTATCCACCTCAGGAAACATGCTTGTGTTTGTGCCAGTCAGTCCACTTCCTGAAAGAATGGATTTAAAATACCACCAATGTAAGAATACAAGAAGGTAGTACCTTCATCAACCGAGGTTGCAGGTGTAACGACATGGAGATTAGGCCTTTTGGTCATGAAGTCACCAACTGTGTAGACTCCGTTGTTGTG |
Tissues |
leaf and panicle/shoot, root |
Exon boundary |
Yes-Yes |
Splicing signals |
AC-CT |
circRNA sequence |
NA |
Genomic sequence |
CTTCCAAGTACTATCCACCTCAGGAAACATGCTTGTGTTTGTGCCAGTCAGTCCACTTCCTGAAAGAATGGATTTAAAATACCACCAATGTAAGAATACAAGGATTATGGCATTTACTACCCAACAGTATACTTTCAAAAAATAAGTTAAATAGCTCAAGTTAATCTTTGCAGCTTAGAGTTCCAGAAAAGTTGCAGTGTGGGCAAAGCTTTTGTTGCATTCAGAATTTCAGATCAAAGTTATGGTTGCTATGGTTTAAACAAGGTTTGGTTGTAGGTATGCAAAAGATTATATGGTCCAAGCCGCCACTACTTATGGTTCTTTCTAGTTGTGATCCTGCCTATCAGGCTATCAAGATATTGACAAATGACCACCATGTATGACTGCAAGCAGATGGTTAGATGGTAGTGCAATGGTGTGTTAATGACAAATACTAGGCTTATGCAGTTTAGAGGATGCAATATTGTACTAGTAATATGAATTTGTTGTAAGCAAGTGATTTGAAGGTCCAAGAAGGAATACCTGATATTGAGTCAAGTGCTAACAGATCATAATCTGAGACAACACCCACCTGCAGGTGGAAGTAAGATTGAGTGGCAGAATGAGAAATCAGATACAATTCAACCATAATGTCAATGTAATGTTTCTTAAGACACAACATAATAGAGGAGATCAAAAGGCCCGCATGTCATGGGGACAAGGACACCGTTTTATGAATCAGCACTACATTCTAGATGTGAGCATTCCAAGATCTCTAAATCCTTTAGGTAGAATCACCATACTAGTTCGAATTTAGCATGTAAAAAGGTATAAAGTTTGAAACCGTGTTTGAGAAAGAAAATATCCTAGAATCATGTTACTGAGATAACTATTTAGCAATAAATCATTTCCCCTTGAGAAAAGCCCAACGTTGTTGACTTGTAAGCATAACTGTTTTGAGAATAAAAATTGCAGAGAGTAAGTAGAAAAAGATTGAATAGAGTGAAGTTTTGATGGGCACTAACCAACTTTCCGGTGTCATCAACAACAGGGAAACCAGAGATCTTGTGTTGCACCAGCGTCTCGAGAGCTGTAAAAACGAACAGAATAATAAGTTGGCGATTTGGTTTAGCAGCAAGCATAGTTAGGACATACTTCATATTATAGAAGTAGAGAAGAAGGTAGTACCTTCATCAACCGAGGTTGCAGGTGTAACGACATGGAGATTAGGCCTTTTGGTCATGAAGTCACCAACTGTGTAGACTCCGTTGTTGTG |