ncRNA ID |
osa_circ_038404 |
Species |
Oryza sativa |
Class |
circRNA |
Genome position |
9:1160334-1160819[+] |
Reference genome |
RGAPv7 |
Source |
PlantcircBase
|
Method |
find_circ/circseq_cup/NA |
Type |
exonic |
Splice junction sequence |
ACTGGGTCAGGGAAGACCTACACCATGGGGACGGCCTGCAAGGAGGGCTCACACATTGGGATTATCCCGCGTGCCATGGCCACGCTGTTCGACAAGATCGCCGAAGTGCATGTCACTACCCAGAAAGAAATGACGGCATGCCTTGAGCAAGGATCTCTGAGTCGTGCAACTGGAAGTACCAACATGAACAACCAATCAAG |
Tissues |
root/root/shoot, root, seed |
Exon boundary |
Yes-Yes |
Splicing signals |
AG-GT |
circRNA sequence |
ACTGGGTCAGGGAAGACCTACACCATGGGGACGGCCTGCAAGGAGGGCTCACACATTGGGATTATCCCGCGTGCCATGGCCACGCTGTTCGACAAGATCGACAAGCTCAAGAACCAAGTAGAGTTCCAGCTGCGCGTTTCGTTTATTGAGATTCTGAAAGAAGAGGTGAGGGATTTGCTTGATCCTGCTACTGCTGCTGTTGGCAAACTTGAGAATGGAAATGGACATGCAACCAAGTTGTCGGTTCCAGGTAAACCCCCTGTTCAGATCCGGGAGGCGTCGAACGGGGTCATAACGTTAGCAGGATCGACCGAAGTGCATGTCACTACCCAGAAAGAAATGACGGCATGCCTTGAGCAAGGATCTCTGAGTCGTGCAACTGGAAGTACCAACATGAACAACCAATCAAG |
Genomic sequence |
ACTGGGTCAGGGAAGACCTACACCATGGGGACGGCCTGCAAGGAGGGCTCACACATTGGGATTATCCCGCGTGCCATGGCCACGCTGTTCGACAAGATCGACAAGCTCAAGAACCAAGTAGAGTTCCAGCTGCGCGTTTCGTTTATTGAGGTAAATTACCTGTTCCTGGATGAATCAAACATTTGTGGGATTGTAGAGAATCCAATTGTGCTCGTTCTCTTGATAGATTCTGAAAGAAGAGGTGAGGGATTTGCTTGATCCTGCTACTGCTGCTGTTGGCAAACTTGAGAATGGAAATGGACATGCAACCAAGTTGTCGGTTCCAGGTAAACCCCCTGTTCAGATCCGGGAGGCGTCGAACGGGGTCATAACGTTAGCAGGATCGACCGAAGTGCATGTCACTACCCAGAAAGAAATGACGGCATGCCTTGAGCAAGGATCTCTGAGTCGTGCAACTGGAAGTACCAACATGAACAACCAATCAAG |