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BaseInfo

ncRNA ID bra-miR168a-5p
Species Brassica rapa
Class miRNA
Genome position chrA6:25084101-25084233 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 18 - UCGCUUGGUGCAGGUCGGGAA - 38
Stem-loop(if miRNA)      G   C   U  C              U     A      --G   G   CC    --     C
UUACG CGG CUC GA UCGCUUGGUGCAGG CGGGA CUGAUU   GCU ACA  GCCA  CGUGG U
||||| ||| ||| || |||||||||||||| ||||| ||||||   ||| |||  ||||  |||||
AGUGC GCC GAG CU AGUGAACUAUGUUC GCCCU GGCUAG   CGA UGU  CGGU  GUACC U
     A   U   C  A              C     A      GGA   G   -U    UG     U
Stem-loop sequence UUACGGCGGCCUCUGACUCGCUUGGUGCAGGUCGGGAACUGAUUGGCUGACACCGCCACGUGGCUUUCCAUGGUUGGCUUGUGAGCAGGGAUCGGAUCCCGCCUUGUAUCAAGUGAAUCCGAGUCCGACGUGA

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).