ncRNA ID | bra-miR168a-5p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA6:25084101-25084233 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 18 - UCGCUUGGUGCAGGUCGGGAA - 38 |
Stem-loop(if miRNA) |
     G   C   U  C              U     A      --G   G   CC    --     C UUACG CGG CUC GA UCGCUUGGUGCAGG CGGGA CUGAUU   GCU ACA  GCCA  CGUGG U ||||| ||| ||| || |||||||||||||| ||||| ||||||   ||| |||  ||||  ||||| AGUGC GCC GAG CU AGUGAACUAUGUUC GCCCU GGCUAG   CGA UGU  CGGU  GUACC U      A   U   C  A              C     A      GGA   G   -U    UG     U |
Stem-loop sequence | UUACGGCGGCCUCUGACUCGCUUGGUGCAGGUCGGGAACUGAUUGGCUGACACCGCCACGUGGCUUUCCAUGGUUGGCUUGUGAGCAGGGAUCGGAUCCCGCCUUGUAUCAAGUGAAUCCGAGUCCGACGUGA |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |