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BaseInfo

ncRNA ID	novel_gma_miR1109
Species	Glycine max
Class	miRNA
Genome position	Chr9:4107023-4107215 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451638
Length	22
Mature sequence(if miRNA)	172 - CUUUCUAAGACGGUUGUUAGCU - 193
Stem-loop(if miRNA)	--                    C   CAU           ----------          C     CAU    -CACCCGC              ---    U   CUUUCUAAGACGGUUGUUAG UAA   CCGUCUUAGAA          AUGGUACUUU UAAGA   UUGU        GACCGUCUUAGAAA   GUCU A   |||||||||||||||||||| |||   |||||||||||          |||||||||| |||||   ||||        ||||||||||||||   |||| C   GAAAGAUUCUGCCAACAAUC AUU   GGUAGAAUCUU          UACUAUGAAA AUUCU   AACA        UUGGCAGAAUCUUU   CAGA A UU                    A   AUU           CCAUAAUCUU          A     ACC    AUCGAUUA              CAA    U
Stem-loop sequence	CUUUCUAAGACGGUUGUUAGCUAACAUCCGUCUUAGAAAUGGUACUUUCUAAGACAUUUGUCACCCGCGACCGUCUUAGAAAGUCUUACAUAGACAACUUUCUAAGACGGUUAUUAGCUAACAACCAUCUUAAAAAGUAUCAUUUCUAAUACCUUCUAAGAUGGUUAUUAACUAACAACCGUCUUAGAAAGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014775518.1	ncRNA:22   UCGAUUGUUGGCAGAAUCUUUC   1   |*=*||=||||||||||||||| targets:737   AUUGAAUAACCGUCUUAGAAAG   758 Target Full Sequence	2.0	PREDICTED: Glycine max methylsterol monooxygenase 1-1-like (LOC100802435), mRNA	methylsterol monooxygenase 1-1-like(LOC100802435)	coding protein	psRNATarget
XM_014764114.1	ncRNA:22   UCGAUUGUUGGCAGAAUCUUUC   1   ****=||||||||||||||||| targets:2086   UAGAGACAACCGUCUUAGAAAG   2107 Target Full Sequence	2.0	PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X6, mRNA	somatic embryogenesis receptor kinase 1-like(LOC100777573)	coding protein	psRNATarget
XM_014764113.1	ncRNA:22   UCGAUUGUUGGCAGAAUCUUUC   1   ****=||||||||||||||||| targets:2094   UAGAGACAACCGUCUUAGAAAG   2115 Target Full Sequence	2.0	PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X2, mRNA	somatic embryogenesis receptor kinase 1-like(LOC100777573)	coding protein	psRNATarget
XM_006591004.2	ncRNA:22   UCGAUUGUUGGCAGAAUCUUUC   1   ****=||||||||||||||||| targets:2150   UAGAGACAACCGUCUUAGAAAG   2171 Target Full Sequence	2.0	PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X5, mRNA	somatic embryogenesis receptor kinase 1-like(LOC100777573)	coding protein	psRNATarget
XM_014764112.1	ncRNA:22   UCGAUUGUUGGCAGAAUCUUUC   1   ****=||||||||||||||||| targets:2166   UAGAGACAACCGUCUUAGAAAG   2187 Target Full Sequence	2.0	PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X1, mRNA	somatic embryogenesis receptor kinase 1-like(LOC100777573)	coding protein	psRNATarget
XM_014767461.1	ncRNA:22   UCGAUUGUUGGCAGAAUCUUUC   1   ||-|||*|||||||||||||*| targets:2610   AG-UAAAAACCGUCUUAGAAUG   2630 Target Full Sequence	2.5	PREDICTED: Glycine max putative dual specificity protein phosphatase DSP8 (LOC100787468), transcript variant X1, mRNA	putative dual specificity protein phosphatase DSP8(LOC100787468)	coding protein	psRNATarget
XM_014763138.1	ncRNA:22   UCGAUUGUUGGCAGAAUCUUUC   1   |*||||*||||*|||||||||| targets:1589   AACUAAAAACCAUCUUAGAAAG   1610 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X3, mRNA	uncharacterized LOC100806242(LOC100806242)	coding protein	psRNATarget
XM_006589010.2	ncRNA:22   UCGAUUGUUGGCAGAAUCUUUC   1   |*||||*||||*|||||||||| targets:2298   AACUAAAAACCAUCUUAGAAAG   2319 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X2, mRNA	uncharacterized LOC100806242(LOC100806242)	coding protein	psRNATarget
XM_014767461.1	ncRNA:22   UCGAUUG-UUGGCAGAAUCUUUC   1   =|=|=||-||||||||||||||| targets:1933   GGUUGACCAACCGUCUUAGAAAG   1955 Target Full Sequence	3.0	PREDICTED: Glycine max putative dual specificity protein phosphatase DSP8 (LOC100787468), transcript variant X1, mRNA	putative dual specificity protein phosphatase DSP8(LOC100787468)	coding protein	psRNATarget