Search result

BaseInfo

ncRNA ID novel_gma_miR1096
Species Glycine max
Class miRNA
Genome position Chr6:16734397-16734477 [+]
Reference genome Glycine_max_v2.0
Source SRR1451638
Length 20
Mature sequence(if miRNA) 1 - UUUGGAUAGAGAAUUUUGAC - 20
Stem-loop(if miRNA) --  UG     A         CCG   AAAAU      UUAG
  UU  GAUAG GAAUUUUGA   AAA     AAUUUA    A
  ||  ||||| |||||||||   |||     ||||||
  AG  UUGUU CUUAAAAUU   UUU     UUAAAU    U
GU  GU     A         UAA   ---CU      UUAA
Stem-loop sequence UUUGGAUAGAGAAUUUUGACCGAAAAAAAUAAUUUAUUAGAUAAUUUAAAUUUCUUUAAUUUAAAAUUCAUUGUUUGGAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KM587700.1
ncRNA:20   CAGUUUUAAGAGAUAGGUUU   1
  *|||||*||||||*||||||
targets:453   CUCAAAUUUCUCUUUCCAAA   472

2.5 Glycine max clone GmWRKY42 WRKY mRNA, complete cds NA coding protein psRNATarget
NM_001317594.1
ncRNA:20   CAGUUUUAAGAGAUAGGUUU   1
  *|||||*||||||*||||||
targets:514   CUCAAAUUUCUCUUUCCAAA   533

2.5 Glycine max probable WRKY transcription factor 25 (LOC100127393), mRNA NA coding protein psRNATarget
XM_003532786.3
ncRNA:20   CAGUUUUAAGAGAUAGGUUU   1
  *|||==|||||||||||||*
targets:1314   UUCAGGAUUCUCUAUCCAAU   1333

3.0 PREDICTED: Glycine max putative ETHYLENE INSENSITIVE 3-like 4 protein (LOC100789795), mRNA putative ETHYLENE INSENSITIVE 3-like 4 protein(LOC100789795) coding protein psRNATarget