ncRNA ID | novel_gma_miR1095 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr5:8397466-8397643 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451638;SRR1451650;SRR1451652;SRR1451660;SRR1451611 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UUUCAAAAAACCGAUGUUAACUGU - 24 |
Stem-loop(if miRNA) |
--                        AA           C                              -  A        UUUCAACA   AGUUAACAUCGGUUUUUUGAAAAA  AUCGAUAUUAA UAACGUUAACAUCGAUUUUUUGUAAAAAAA UC AUGUUAAC        U   ||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||| || ||||||||        U   UCAAUUGUAGCCAAAAAACUUUUU  UAGCUAUAAUU AUUGCAAUUGUAGCUAAAAGACAUUUUUUU AG UACAAUUG        A UG                        --           A                              U  C        CUUACACA |
Stem-loop sequence | AGUUAACAUCGGUUUUUUGAAAAAAAAUCGAUAUUAACUAACGUUAACAUCGAUUUUUUGUAAAAAAAUCAAUGUUAACUUUCAACAUUAACACAUUCGUUAACAUCGAUUUUUUUUACAGAAAAUCGAUGUUAACGUUAAUUAAUAUCGAUUUUUUCAAAAAACCGAUGUUAACUGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
JB171004.1 |
|
1.5 | Sequence 8668 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
JB171004.1 |
|
1.5 | Sequence 8668 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
LQ242673.1 |
|
1.5 | Sequence 8668 from Patent EP2985353 | NA | coding protein | psRNATarget | |||||||||
LQ242673.1 |
|
1.5 | Sequence 8668 from Patent EP2985353 | NA | coding protein | psRNATarget | |||||||||
HI410543.1 |
|
1.5 | Sequence 8668 from Patent EP2074227 | NA | coding protein | psRNATarget | |||||||||
HI410543.1 |
|
1.5 | Sequence 8668 from Patent EP2074227 | NA | coding protein | psRNATarget |