ncRNA ID | bra-miR9554-5p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA6:18355807-18355956 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 9 - GAAUGAUACUUGGAUAUAAUC - 29 |
Stem-loop(if miRNA) |
---                         A   A            C  CC             ------    -A   UC    ACUUCUAGGAAUGAUACUUGGAUAU AUC UGGAAUGGAGUA AU  GAUUCUUAAGUUU      UGGC  CAU  U    ||||||||||||||||||||||||| ||| |||||||||||| ||  |||||||||||||      ||||  |||    UGAAGGUCCUUACUAUGAACCUAUA UAG ACCUUAUCUCAU UA  CUAGGAAUUCAAA      ACCG  GUA  U AAA                         C   A            A  --             GAGAAA    GA   UC |
Stem-loop sequence | ACUUCUAGGAAUGAUACUUGGAUAUAAUCAUGGAAUGGAGUACAUCCGAUUCUUAAGUUUUGGCACAUUCUUCUAUGAGGCCAAAAGAGAAACUUAAGGAUCAUAUACUCUAUUCCAAGAUCAUAUCCAAGUAUCAUUCCUGGAAGUAAA |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |