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BaseInfo

ncRNA ID bra-miR9554-5p
Species Brassica rapa
Class miRNA
Genome position chrA6:18355807-18355956 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 9 - GAAUGAUACUUGGAUAUAAUC - 29
Stem-loop(if miRNA) ---                         A   A            C  CC             ------    -A   UC
   ACUUCUAGGAAUGAUACUUGGAUAU AUC UGGAAUGGAGUA AU  GAUUCUUAAGUUU      UGGC  CAU  U
   ||||||||||||||||||||||||| ||| |||||||||||| ||  |||||||||||||      ||||  |||
   UGAAGGUCCUUACUAUGAACCUAUA UAG ACCUUAUCUCAU UA  CUAGGAAUUCAAA      ACCG  GUA  U
AAA                         C   A            A  --             GAGAAA    GA   UC
Stem-loop sequence ACUUCUAGGAAUGAUACUUGGAUAUAAUCAUGGAAUGGAGUACAUCCGAUUCUUAAGUUUUGGCACAUUCUUCUAUGAGGCCAAAAGAGAAACUUAAGGAUCAUAUACUCUAUUCCAAGAUCAUAUCCAAGUAUCAUUCCUGGAAGUAAA

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).