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BaseInfo

ncRNA ID novel_gma_miR1087
Species Glycine max
Class miRNA
Genome position Chr3:10169147-10169213 [+]
Reference genome Glycine_max_v2.0
Source SRR1451638;SRR1294484;SRR1294485;SRR1295531;SRR1451607;SRR1451617;SRR1451620;SRR1451624
Length 22
Mature sequence(if miRNA) 1 - AUAUUCCUACUUCCCCAUCAGG - 22
Stem-loop(if miRNA) --                       GC    - U
  AUAUUCCUACUUCCCCAUCAGGU  UGAU C C
  |||||||||||||||||||||||  |||| |
  UAUAAGGAUGAAGGGGUGGUCCG  ACUA G U
GA                       AU    U G
Stem-loop sequence AUAUUCCUACUUCCCCAUCAGGUGCUGAUCUCUGGUAUCAUAGCCUGGUGGGGAAGUAGGAAUAUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014775525.1
ncRNA:22   GGACUACCCCUUCAUCCUUAUA   1
  |||||||||||||||||||||*
targets:2035   CCUGAUGGGGAAGUAGGAAUAG   2056

1.0 PREDICTED: Glycine max uncharacterized LOC106798717 (LOC106798717), mRNA uncharacterized LOC106798717(LOC106798717) coding protein psRNATarget
XM_014762716.1
ncRNA:22   GGACUACCCCUUCAUCCUUAUA   1
  =|*|||||||||||||||||=|
targets:425   UCAGAUGGGGAAGUAGGAAUGU   446

1.5 PREDICTED: Glycine max pollen-specific protein SF21-like (LOC106794830), mRNA pollen-specific protein SF21-like(LOC106794830) coding protein psRNATarget