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BaseInfo

ncRNA ID	bra-miR164d-3p
Species	Brassica rapa
Class	miRNA
Genome position	chrA6:18241365-18241474 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	18 - CACGUGUUCUACUACUCCAAC - 38
Stem-loop(if miRNA)	--------GUAU   U  C     A  C              CAAAUGA      G   UA             CAC UG UGGAG AG AGGGCACGUGCGAA       GUUUGA CAG  C             ||| || ||||| || ||||||||||||||       |||||| |||             GUG AC ACCUC UC UCUUGUGCACGCUU       UAAACU GUU  A CUUCCCCUCUAU   C  A     A  A              ------A      A   UU
Stem-loop sequence	GUAUCACUUGCUGGAGAAGCAGGGCACGUGCGAACAAAUGAGUUUGAGCAGUACAUUUUGAUCAAAUAUUCGCACGUGUUCUACUACUCCAACACGUGUAUCUCCCCUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009109641.2	ncRNA:21   CAACCUCAUCAUCUUGUGCAC   1   **|||||*||*|||||||||| targets:847   UGUGGAGAAGCAGAACACGUG   867 Target Full Sequence	2.5	PREDICTED: Brassica rapa outer envelope pore protein 16-2, chloroplastic-like (LOC103833555), mRNA	outer envelope pore protein 16-2, chloroplastic-like(LOC103833555)	coding protein	psRNATarget
XM_018653690.1	ncRNA:21   CAACCUCAUCAUCUUGUGCAC   1   |**||||*||||||||||||* targets:1352   GCGGGAGGAGUAGAACACGUC   1372 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC103833994 (LOC103833994), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_009110047.2	ncRNA:21   CAACCUCAUCAUCUUGUGCAC   1   |**||||*||||||||||||* targets:2830   GCGGGAGGAGUAGAACACGUC   2850 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC103833994 (LOC103833994), transcript variant X1, mRNA	uncharacterized LOC103833994(LOC103833994)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).