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BaseInfo

ncRNA ID novel_gma_miR1071
Species Glycine max
Class miRNA
Genome position Chr1:11098315-11098451 [+]
Reference genome Glycine_max_v2.0
Source SRR1294479
Length 24
Mature sequence(if miRNA) 114 - AAGGACCGAUGUAGAAUGUUGAGC - 137
Stem-loop(if miRNA) --                      ---CGAC     UC                     AU A     GU
  UCAACAUUCUACAUCGGUUCUU       GACCG  GUAGAAAACUUAGCAUUCUAC  C GUCAU  A
  ||||||||||||||||||||||       |||||  |||||||||||||||||||||  | |||||
  AGUUGUAAGAUGUAGCCAGGAA       CUGGC  CAUCUUUUGAGUCGUAAGAUG  G CAGUG  G
CG                      AUCAAGA     UA                     CU C     UU
Stem-loop sequence UCAACAUUCUACAUCGGUUCUUCGACGACCGUCGUAGAAAACUUAGCAUUCUACAUCAGUCAUGUAGUUGUGACCGUCGUAGAAUGCUGAGUUUUCUACAUCGGUCAGAACUAAAGGACCGAUGUAGAAUGUUGAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006598094.2
ncRNA:24   CGAGUUGUAAGAUGUAGCCAGGAA   1
  |**=||||||||||||=|||||||
targets:1016   GAAUAACAUUCUACAUUGGUCCUU   1039

1.5 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X20, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_014768221.1
ncRNA:24   CGAGUUGUAAGAUGUAGCCAGGAA   1
  |**=||||||||||||=|||||||
targets:1129   GAAUAACAUUCUACAUUGGUCCUU   1152

1.5 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X21, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_014768217.1
ncRNA:24   CGAGUUGUAAGAUGUAGCCAGGAA   1
  |**=||||||||||||=|||||||
targets:1289   GAAUAACAUUCUACAUUGGUCCUU   1312

1.5 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X9, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_014768216.1
ncRNA:24   CGAGUUGUAAGAUGUAGCCAGGAA   1
  |**=||||||||||||=|||||||
targets:1566   GAAUAACAUUCUACAUUGGUCCUU   1589

1.5 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X8, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_014768212.1
ncRNA:24   CGAGUUGUAAGAUGUAGCCAGGAA   1
  |**=||||||||||||=|||||||
targets:1729   GAAUAACAUUCUACAUUGGUCCUU   1752

1.5 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X1, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_006598094.2
ncRNA:24   CGAGUUGUAAGAUGUAGCCAGGAA   1
  ||*=|=|||||||||||||||||*
targets:931   GCAUAGCAUUCUACAUCGGUCCUC   954

2.0 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X20, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_014768221.1
ncRNA:24   CGAGUUGUAAGAUGUAGCCAGGAA   1
  ||*=|=|||||||||||||||||*
targets:1044   GCAUAGCAUUCUACAUCGGUCCUC   1067

2.0 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X21, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_014768217.1
ncRNA:24   CGAGUUGUAAGAUGUAGCCAGGAA   1
  ||*=|=|||||||||||||||||*
targets:1204   GCAUAGCAUUCUACAUCGGUCCUC   1227

2.0 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X9, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_014768216.1
ncRNA:24   CGAGUUGUAAGAUGUAGCCAGGAA   1
  ||*=|=|||||||||||||||||*
targets:1481   GCAUAGCAUUCUACAUCGGUCCUC   1504

2.0 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X8, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_014768212.1
ncRNA:24   CGAGUUGUAAGAUGUAGCCAGGAA   1
  ||*=|=|||||||||||||||||*
targets:1644   GCAUAGCAUUCUACAUCGGUCCUC   1667

2.0 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X1, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_006598094.2
ncRNA:24   CGAGUUGUAAGAUGUAGCCAGGAA   1
  |**=|||||||||||||||||*|*
targets:973   GGAUAACAUUCUACAUCGGUCAUG   996

2.5 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X20, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_014768221.1
ncRNA:24   CGAGUUGUAAGAUGUAGCCAGGAA   1
  |**=|||||||||||||||||*|*
targets:1086   GGAUAACAUUCUACAUCGGUCAUG   1109

2.5 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X21, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_014768217.1
ncRNA:24   CGAGUUGUAAGAUGUAGCCAGGAA   1
  |**=|||||||||||||||||*|*
targets:1246   GGAUAACAUUCUACAUCGGUCAUG   1269

2.5 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X9, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_014768216.1
ncRNA:24   CGAGUUGUAAGAUGUAGCCAGGAA   1
  |**=|||||||||||||||||*|*
targets:1523   GGAUAACAUUCUACAUCGGUCAUG   1546

2.5 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X8, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
XM_014768212.1
ncRNA:24   CGAGUUGUAAGAUGUAGCCAGGAA   1
  |**=|||||||||||||||||*|*
targets:1686   GGAUAACAUUCUACAUCGGUCAUG   1709

2.5 PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X1, mRNA nuclear pore complex protein GP210-like(LOC100812621) coding protein psRNATarget
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