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BaseInfo

ncRNA ID novel_gma_miR1069
Species Glycine max
Class miRNA
Genome position Chr18:4955941-4956036 [+]
Reference genome Glycine_max_v2.0
Source SRR1451638
Length 21
Mature sequence(if miRNA) 76 - UGAAACUCUAAUUCUAACAGA - 96
Stem-loop(if miRNA) --A        C    A       AU           AACAAA     GC
   GUUAGAGU AGAG UUCACCU  AUAAUUUAUGU      AAUUU  A
   |||||||| |||| |||||||  |||||||||||      |||||
   CAAUCUUA UCUC AAGUGGA  UAUUGAGUACA      UUAAG  U
AGA        A    A       AU           ----AC     AU
Stem-loop sequence AGUUAGAGUCAGAGAUUCACCUAUAUAAUUUAUGUAACAAAAAUUUGCAUUAGAAUUCAACAUGAGUUAUUAAGGUGAAACUCUAAUUCUAACAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU019563.1
ncRNA:21   AGACAAUCUUAAUCUCAAAGU   1
  ||*||||||=|||||||||||
targets:994   UCGGUUAGAGUUAGAGUUUCA   1014

2.5 Glycine max transcription factor (WRKY19) mRNA, partial cds NA coding protein psRNATarget
AK245549.1
ncRNA:21   AGACAAUCUUAAUCUCAAAGU   1
  ||*||||||=|||||||||||
targets:1860   UCGGUUAGAGUUAGAGUUUCA   1880

2.5 Glycine max cDNA, clone: GMFL01-33-N21 NA coding protein psRNATarget
XM_003538275.3
ncRNA:21   AGACAAUCUUAAUCUCAAAGU   1
  ||*||||||=|||||||||||
targets:2017   UCGGUUAGAGUUAGAGUUUCA   2037

2.5 PREDICTED: Glycine max probable WRKY transcription factor 25 (LOC100127421), mRNA probable WRKY transcription factor 25(LOC100127421) coding protein psRNATarget
BT098633.1
ncRNA:21   AGACAAUCUUAAUCUCAAAGU   1
  |=||||=||||||||*|||||
targets:881   UUUGUUGGAAUUAGACUUUCA   901

2.5 Soybean clone JCVI-FLGm-12D4 unknown mRNA NA coding protein psRNATarget