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BaseInfo

ncRNA ID bra-miR9560b-3p
Species Brassica rapa
Class miRNA
Genome position chrA6:18161518-18161653 [+]
Reference genome Brapa_1.1
Source miRBase
Length 24
Mature sequence(if miRNA) 85 - UCAUAUUAGUUCUACCUCCUGCUG - 108
Stem-loop(if miRNA) ACU         UA  C    -   U  A  GA    U        A           --------    AC
   AUCUUAUUU  AG UUAA GUG GU UU  CAGG GGUGGAAC AAUAUGAGUUU        UUGA  A
   |||||||||  || |||| ||| || ||  |||| |||||||| |||||||||||        ||||  U
   UAGAAUAAG  UC AAUU CAC CG AG  GUCC CCAUCUUG UUAUACUCAAA        AACU  U
GUU         --  U    A   C  A  UC    U        A           UUAAAACA    GA
Stem-loop sequence ACUAUCUUAUUUUAAGCUUAAGUGUGUAUUGACAGGUGGUGGAACAAAUAUGAGUUUUUGAACAUUAGUCAAACAAAAUUAAACUCAUAUUAGUUCUACCUCCUGCUGAAGCCCACAUUAAUCUGAAUAAGAUUUG

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).