ncRNA ID | bra-miR9560b-3p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA6:18161518-18161653 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 85 - UCAUAUUAGUUCUACCUCCUGCUG - 108 |
Stem-loop(if miRNA) |
ACU         UA  C    -   U  A  GA    U        A           --------    AC    AUCUUAUUU  AG UUAA GUG GU UU  CAGG GGUGGAAC AAUAUGAGUUU        UUGA  A    |||||||||  || |||| ||| || ||  |||| |||||||| |||||||||||        ||||  U    UAGAAUAAG  UC AAUU CAC CG AG  GUCC CCAUCUUG UUAUACUCAAA        AACU  U GUU         --  U    A   C  A  UC    U        A           UUAAAACA    GA |
Stem-loop sequence | ACUAUCUUAUUUUAAGCUUAAGUGUGUAUUGACAGGUGGUGGAACAAAUAUGAGUUUUUGAACAUUAGUCAAACAAAAUUAAACUCAUAUUAGUUCUACCUCCUGCUGAAGCCCACAUUAAUCUGAAUAAGAUUUG |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |