| ncRNA ID | novel_gma_miR1060 |
| Species | Glycine max |
| Class | miRNA |
| Genome position | Chr17:5895658-5895840 [+] |
| Reference genome | Glycine_max_v2.0 |
| Source | SRR1451638;SRR1294480;SRR1294481;SRR2045228;SRR2045374;SRR2045375;SRR1295516;SRR1295519;SRR1295521;SRR1295527;SRR1451619 |
| Length | 24 |
| Mature sequence(if miRNA) | 160 - AUGACGAGACUGAUGAAUUCACAU - 183 |
| Stem-loop(if miRNA) |
-- U - A -AA UU AG ------------ A --U UU UAAA ----- UUAA GUG GUUUAU GGUUUUG UCA AUG UGUU UAUAAA AGGAGGG GUG UGAA U AUAAGAAUAUA UGGA U ||| |||||| ||||||| ||| ||| |||| |||||| ||||||| ||| |||| | ||||||||||| |||| U CAC UAAGUA UCAGAGC AGU UAC GUAA AUAUUU UUCUUUC CAC ACUU A UGUUCUUAUAU ACUU A UA U G - AUA -U AA GUUUUUUAAUAC - UCU UU ---- UUAGG UUUG |
| Stem-loop sequence | GUGUGUUUAUGGUUUUGAUCAAAAUGUUUGUUAGUAUAAAAGGAGGGAGUGUUGAAUUUUAAAAUAAGAAUAUAUGGAUUAAUUAGUUUUUCAGGAUUUAUAUUCUUGUAUUUUCAUCUCACCUUUCUUCAUAAUUUUUUGUUUAUAAAAAUGUCAUAUAUGACGAGACUGAUGAAUUCACAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_014775836.1 |
|
2.5 | PREDICTED: Glycine max uncharacterized LOC100816646 (LOC100816646), transcript variant X3, mRNA | uncharacterized LOC100816646(LOC100816646) | coding protein | psRNATarget | |||||||||
| XM_003524399.3 |
|
2.5 | PREDICTED: Glycine max uncharacterized LOC100816646 (LOC100816646), transcript variant X1, mRNA | uncharacterized LOC100816646(LOC100816646) | coding protein | psRNATarget |