ncRNA ID | bra-miR9560b-5p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA6:18161518-18161653 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 32 - ACAGGUGGUGGAACAAAUAUGAGU - 55 |
Stem-loop(if miRNA) |
ACU UA C - U A GA U A -------- AC AUCUUAUUU AG UUAA GUG GU UU CAGG GGUGGAAC AAUAUGAGUUU UUGA A ||||||||| || |||| ||| || || |||| |||||||| ||||||||||| |||| U UAGAAUAAG UC AAUU CAC CG AG GUCC CCAUCUUG UUAUACUCAAA AACU U GUU -- U A C A UC U A UUAAAACA GA |
Stem-loop sequence | ACUAUCUUAUUUUAAGCUUAAGUGUGUAUUGACAGGUGGUGGAACAAAUAUGAGUUUUUGAACAUUAGUCAAACAAAAUUAAACUCAUAUUAGUUCUACCUCCUGCUGAAGCCCACAUUAAUCUGAAUAAGAUUUG |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |