ncRNA ID | ath-miR5637 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr2:12270179-12270373 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 163 - AAUGCGCAACUCUAUAUUUCC - 183 |
Stem-loop(if miRNA) |
A   C      C     G             -           C    GACUCUAUAAA          UUUUA   CAUUGUAUGCCUCUAAAAUAGAGG  AGA CAUCUC AAUGC CAACUCUAUAUUU CCUCUAUUUUA AGUU           AUAUAGUUGA     CUG                        A  ||| |||||| ||||| ||||||||||||| ||||||||||| ||||           ||||||||||     |||  UCU GUAGAG UUACG GUUGAGAUAUAAA GGAGAUAAAAU UCAA           UAUAUCAACU     CGA                        A A   C      U     G             A           C    ---AUCUCUUA          -----   UUAUUUUCUCGUUAGAGAUGUAAA |
Stem-loop sequence | AAGACCAUCUCCAAUGCGCAACUCUAUAUUUCCUCUAUUUUACAGUUGACUCUAUAAAAUAUAGUUGAUUUUACUGCAUUGUAUGCCUCUAAAAUAGAGGAAAAAUGUAGAGAUUGCUCUUUUAUUAGCUCAACUAUAUAUUCUCUAAACUCUAAAAUAGAGGAAAAUAUAGAGUUGGGCAUUUGAGAUGCUCUA |
1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |