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BaseInfo

ncRNA ID ath-miR5637
Species Arabidopsis thaliana
Class miRNA
Genome position chr2:12270179-12270373 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 163 - AAUGCGCAACUCUAUAUUUCC - 183
Stem-loop(if miRNA) A   C      C     G             -           C    GACUCUAUAAA          UUUUA   CAUUGUAUGCCUCUAAAAUAGAGG
 AGA CAUCUC AAUGC CAACUCUAUAUUU CCUCUAUUUUA AGUU           AUAUAGUUGA     CUG                        A
 ||| |||||| ||||| ||||||||||||| ||||||||||| ||||           ||||||||||     |||
 UCU GUAGAG UUACG GUUGAGAUAUAAA GGAGAUAAAAU UCAA           UAUAUCAACU     CGA                        A
A   C      U     G             A           C    ---AUCUCUUA          -----   UUAUUUUCUCGUUAGAGAUGUAAA
Stem-loop sequence AAGACCAUCUCCAAUGCGCAACUCUAUAUUUCCUCUAUUUUACAGUUGACUCUAUAAAAUAUAGUUGAUUUUACUGCAUUGUAUGCCUCUAAAAUAGAGGAAAAAUGUAGAGAUUGCUCUUUUAUUAGCUCAACUAUAUAUUCUCUAAACUCUAAAAUAGAGGAAAAUAUAGAGUUGGGCAUUUGAGAUGCUCUA

Reference

1 PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis";
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN;
Genome Res. 22:163-176(2012).