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BaseInfo

ncRNA ID novel_gma_miR1051
Species Glycine max
Class miRNA
Genome position Chr14:23306383-23306465 [-]
Reference genome Glycine_max_v2.0
Source SRR1451638
Length 24
Mature sequence(if miRNA) 60 - CAUUCUAAGACGGUUGUCCUUAAG - 83
Stem-loop(if miRNA) --          C                          AU
  CAUUCUAAGA GGUUGUCCUUAAGACCGUCUUAGAAU  G
  |||||||||| ||||||||||||||||||||||||||  G
  GUAAGAUUCU CCAACAGGAAUUUUGGCAGAAUCUUA  U
AU          A                          CA
Stem-loop sequence CAUUCUAAGACGGUUGUCCUUAAGACCGUCUUAGAAUAUGGUACAUUCUAAGACGGUUUUAAGGACAACCAUCUUAGAAUGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014764114.1
ncRNA:24   GAAUUCCUGUUGGCAGAAUCUUAC   1
  |*||=*||||||||||||||||*|
targets:2084   CAUAGAGACAACCGUCUUAGAAAG   2107

2.5 PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X6, mRNA somatic embryogenesis receptor kinase 1-like(LOC100777573) coding protein psRNATarget
XM_014764113.1
ncRNA:24   GAAUUCCUGUUGGCAGAAUCUUAC   1
  |*||=*||||||||||||||||*|
targets:2092   CAUAGAGACAACCGUCUUAGAAAG   2115

2.5 PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X2, mRNA somatic embryogenesis receptor kinase 1-like(LOC100777573) coding protein psRNATarget
XM_006591004.2
ncRNA:24   GAAUUCCUGUUGGCAGAAUCUUAC   1
  |*||=*||||||||||||||||*|
targets:2148   CAUAGAGACAACCGUCUUAGAAAG   2171

2.5 PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X5, mRNA somatic embryogenesis receptor kinase 1-like(LOC100777573) coding protein psRNATarget
XM_014764112.1
ncRNA:24   GAAUUCCUGUUGGCAGAAUCUUAC   1
  |*||=*||||||||||||||||*|
targets:2164   CAUAGAGACAACCGUCUUAGAAAG   2187

2.5 PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X1, mRNA somatic embryogenesis receptor kinase 1-like(LOC100777573) coding protein psRNATarget