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BaseInfo

ncRNA ID novel_gma_miR1044
Species Glycine max
Class miRNA
Genome position Chr13:41599861-41600025 [+]
Reference genome Glycine_max_v2.0
Source SRR1451638
Length 21
Mature sequence(if miRNA) 1 - UGUCUAUUACUCUGAAAUUUC - 21
Stem-loop(if miRNA) --  U      C          C  -A   GAUAAUACCUUACCUAAAAUAUGAUACUCAAAUAAAAAUGUACAACUAUUAAG
  UG CUAUUA UCUGAAAUUU UA  AGU                                                     U
  || |||||| |||||||||| ||  |||
  AC GAUAAU AGACUUUAAA AU  UAU                                                     U
AG  U      A          A  AA   UGUUAUAAUUCAUCACUGUUUUAGUUUGGUUCAGAGUAAAAAAAUAUUACUAA
Stem-loop sequence UGUCUAUUACUCUGAAAUUUCUAAAGUGAUAAUACCUUACCUAAAAUAUGAUACUCAAAUAAAAAUGUACAACUAUUAAGUUAAUCAUUAUAAAAAAAUGAGACUUGGUUUGAUUUUGUCACUACUUAAUAUUGUUAUAAUAAAAAUUUCAGAAUAAUAGUCAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014766116.1
ncRNA:21   CUUUAAA-GUCUCAUUAUCUGU   1
  |||||||-|||||||||||||*
targets:1270   GAAAUUUACAGAGUAAUAGACU   1291

3.0 PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At1g51880 (LOC106794186), mRNA probable LRR receptor-like serine/threonine-protein kinase At1g51880(LOC106794186) coding protein psRNATarget
XM_006578671.2
ncRNA:21   CUUUAAAGUCUCAUUAUCUGU   1
  *||=|*||||||||||||||*
targets:732   CAAGUCUCAGAGUAAUAGACU   752

3.0 PREDICTED: Glycine max U5 small nuclear ribonucleoprotein 40 kDa protein-like (LOC102662882), mRNA U5 small nuclear ribonucleoprotein 40 kDa protein-like(LOC102662882) coding protein psRNATarget