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BaseInfo

ncRNA ID novel_gma_miR1041
Species Glycine max
Class miRNA
Genome position Chr1:34435515-34435602 [+]
Reference genome Glycine_max_v2.0
Source SRR1451637;SRR1451638;SRR1451641;SRR1451646;SRR1451654;SRR1451660;SRR3160569;SRR1451625
Length 21
Mature sequence(if miRNA) 68 - CAAACAUGAGAAAUAGCGGCC - 88
Stem-loop(if miRNA) ---CU        AG     AUUU    GAAC        -A    UA
     UUGUUUUU  GUGUU    GACG    CGGGGAAC  GGAA  A
     ||||||||  |||||    ||||    ||||||||  ||||
     GAUAAAGA  UACAA    CUGC    GUUUCUUG  UUUU  U
CCGGC        -G     --AC    ---A        GG    UU
Stem-loop sequence CUUUGUUUUUAGGUGUUAUUUGACGGAACCGGGGAACAGGAAUAAUUUUUUUGGGUUCUUUGACGUCCAAACAUGAGAAAUAGCGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT095187.1
ncRNA:21   CCGGCGAUAAAGAGUACAAAC   1
  |*=|*||=|||||||||||||
targets:230   GUUCUCUGUUUCUCAUGUUUG   250

3.0 Soybean clone JCVI-FLGm-6N2 unknown mRNA NA coding protein psRNATarget
BT093834.1
ncRNA:21   CCGGCGAUAAAGAGUACAAAC   1
  **|=||*|||||||||||||*
targets:1441   AUCUGCAAUUUCUCAUGUUUA   1461

3.0 Soybean clone JCVI-FLGm-24O10 unknown mRNA NA coding protein psRNATarget
AK287363.1
ncRNA:21   CCGGCGAUAAAGAGUACAAAC   1
  **|=||*|||||||||||||*
targets:1440   AUCUGCAAUUUCUCAUGUUUA   1460

3.0 Glycine max cDNA, clone: GMFL01-51-H23 NA coding protein psRNATarget
XM_003551889.3
ncRNA:21   CCGGCGAUAAAGAGUACAAAC   1
  **|=||*|||||||||||||*
targets:1551   AUCUGCAAUUUCUCAUGUUUA   1571

3.0 PREDICTED: Glycine max spermidine hydroxycinnamoyl transferase-like (LOC100778626), mRNA spermidine hydroxycinnamoyl transferase-like(LOC100778626) coding protein psRNATarget