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BaseInfo

ncRNA ID novel_gma_miR1020
Species Glycine max
Class miRNA
Genome position Chr1:15663730-15663881 [-]
Reference genome Glycine_max_v2.0
Source SRR1294479;SRR1451604
Length 24
Mature sequence(if miRNA) 1 - AAUGGCAGUAGAAUGGAGAAGGAG - 24
Stem-loop(if miRNA) --      G     C                          G     C                    G      A
  CCUUCU CAUUC ACUGUCAUUGAUCUUCAAGAAGCAAA GACUC AUUGAUGAAGAAGAUCCAAG CCUACA G
  |||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
  GGAAGA GUAAG UGACGGUAACUAGAAGUUCUUCGUUU CUGAG UAACUACUUCUUCUAGGUUC GGAUGU C
GA      G     A                          A     A                    G      U
Stem-loop sequence CCUUCUGCAUUCCACUGUCAUUGAUCUUCAAGAAGCAAAGGACUCCAUUGAUGAAGAAGAUCCAAGGCCUACAAGCUUGUAGGGCUUGGAUCUUCUUCAUCAAUAGAGUCAUUUGCUUCUUGAAGAUCAAUGGCAGUAGAAUGGAGAAGGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014767757.1
ncRNA:24   GAGGAAGAGGUAAGAUGACGGUAA   1
  ***|*|||||||||||||||=||*
targets:1623   AAACAUCUCCAUUCUACUGCUAUG   1646

2.5 PREDICTED: Glycine max uncharacterized LOC106796179 (LOC106796179), mRNA uncharacterized LOC106796179(LOC106796179) coding protein psRNATarget