ncRNA ID | novel_gma_miR1008 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr19:35709448-35709519 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451637;SRR1451642;SRR1451644;SRR1451646 |
Length | 21 |
Mature sequence(if miRNA) | 1 - CUGGAAUGCAAUUGGAGGUAU - 21 |
Stem-loop(if miRNA) |
--      C           AA         CUAGC   ACCUUC AUUGUAUUCCG  AAGUUCAUU     A   |||||| |||||||||||  |||||||||   UGGAGG UAACGUAAGGU  UUCGAGUAA     U UA      U           CA         AACAU |
Stem-loop sequence | ACCUUCCAUUGUAUUCCGAAAAGUUCAUUCUAGCAUUACAAAAUGAGCUUACUGGAAUGCAAUUGGAGGUAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003532964.3 |
|
3.0 | PREDICTED: Glycine max phospholipase D alpha 4-like (LOC100812642), transcript variant X2, mRNA | phospholipase D alpha 4-like(LOC100812642) | coding protein | psRNATarget | |||||||||
XM_006585458.2 |
|
3.0 | PREDICTED: Glycine max phospholipase D alpha 4-like (LOC100812642), transcript variant X1, mRNA | phospholipase D alpha 4-like(LOC100812642) | coding protein | psRNATarget |