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BaseInfo

ncRNA ID novel_gma_miR1008
Species Glycine max
Class miRNA
Genome position Chr19:35709448-35709519 [-]
Reference genome Glycine_max_v2.0
Source SRR1451637;SRR1451642;SRR1451644;SRR1451646
Length 21
Mature sequence(if miRNA) 1 - CUGGAAUGCAAUUGGAGGUAU - 21
Stem-loop(if miRNA) --      C           AA         CUAGC
  ACCUUC AUUGUAUUCCG  AAGUUCAUU     A
  |||||| |||||||||||  |||||||||
  UGGAGG UAACGUAAGGU  UUCGAGUAA     U
UA      U           CA         AACAU
Stem-loop sequence ACCUUCCAUUGUAUUCCGAAAAGUUCAUUCUAGCAUUACAAAAUGAGCUUACUGGAAUGCAAUUGGAGGUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003532964.3
ncRNA:21   UAUGGAGGUUAACGUAAGGUC   1
  **||=|=|||||||||||||*
targets:10   CAACUUUCAAUUGCAUUCCAA   30

3.0 PREDICTED: Glycine max phospholipase D alpha 4-like (LOC100812642), transcript variant X2, mRNA phospholipase D alpha 4-like(LOC100812642) coding protein psRNATarget
XM_006585458.2
ncRNA:21   UAUGGAGGUUAACGUAAGGUC   1
  **||=|=|||||||||||||*
targets:9   CAACUUUCAAUUGCAUUCCAA   29

3.0 PREDICTED: Glycine max phospholipase D alpha 4-like (LOC100812642), transcript variant X1, mRNA phospholipase D alpha 4-like(LOC100812642) coding protein psRNATarget