ncRNA ID | bra-miR860-3p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA6:17845504-17845618 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 80 - UCAAUACAUUGGACUACAUAU - 100 |
Stem-loop(if miRNA) |
-        U                   C       G    --AG    C      U  UGGUCAAG GUAAUGUAUGUAGUCCAAU UAUUGAA UACU    CACA CAUCUC A  |||||||| ||||||||||||||||||| ||||||| ||||    |||| ||||||  ACUAGUUU CAUUAUAUACAUCAGGUUA AUAACUU AUGA    GUGU GUAGAG G A        U                   C       G    GUUG    A      U |
Stem-loop sequence | UGGUCAAGUGUAAUGUAUGUAGUCCAAUCUAUUGAAGUACUAGCACACCAUCUCUAGUGAGAUGAUGUGGUUGAGUAGUUCAAUACAUUGGACUACAUAUAUUACUUUUGAUCAA |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |